Basic Information
Locus ID:
Ag6G00473
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
SAMDC
Description:
S-adenosylmethionine decarboxylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 15415845 | 15416797 | - | Ag6G00473 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 10,526.20 Da | 45.94 | 82.80 | 0.08 |
Protein Domain:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017619694.1 | PREDICTED: uncharacterized protein LOC108464108 [Gossypium arboreum] | 0 |
| TrEMBL | A0A5E4G943 | PREDICTED: S-adenosylmethionine decarboxylase (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B004418 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 35.253902 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 38.596813 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 55.144299 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 53.840889 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 54.245094 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 49.418655 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 47.643875 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 58.110649 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 34.843781 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.802933 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 37.665989 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 31.035288 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 48.09412 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 31.213428 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 41.01886 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 33.145248 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 24.91078 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 69.361259 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 44.72123 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 89.462151 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 78.579742 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 55.876118 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 51.82872 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 60.124783 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 50.518768 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 53.553162 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 50.259441 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 53.199711 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 57.820118 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 86.535995 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 208.527222 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 159.307404 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 182.320358 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 56.556366 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 122.613129 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 40.761284 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 37.179241 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 34.112366 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 26.266502 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 61.564167 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 60.154896 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 157.459885 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 115.658836 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 36.618172 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 38.975475 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 100.729149 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 40.735584 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.51787 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 31.922647 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 31.1947 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg34883, jg40141, jg9209 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008545 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0017380, CQ.Regalona.r1.8BG0018410 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30264660 |
| Apiaceae | Apium graveolens | 4 | Ag5G02104, Ag6G00473, Ag6G01476, Ag8G02066 |
| Arecaceae | Cocos nucifera | 1 | scaffold012204G000030 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2579.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G31066, Ftri18G28328, Ftri8G32720 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G02468.1, AT3G25572.1, AT5G15948.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015839m.g.v1.0 |
| Brassicaceae | Brassica nigra | 5 | BniB01g061180.2N, BniB02g046830.2N, BniB04g058120.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2647, Ceq08G0807 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0815 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g03270 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g07420, gene.Thate08g24020 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.388 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.2239, CH02.2260, CH03.2307 |
| Poaceae | Oryza coarctata | 1 | Oco03G015070 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G187600, gene-BS78_04G193000 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0204564, Pt_Chr0204619, Pt_Chr0302273 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G000080, Chr23G009610, Chr26G010140, Chr30G009870 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G362300, Tel6E01G424500 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G219400.1, TraesCS6B02G248900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb313410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5178 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21553 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2608, evm.TU.LG03.123, evm.TU.LG03.23 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g02230 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.987, evm.TU.Scaffold_6_RagTag.439 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26305 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16623, nbisL1-mrna-344 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.237, evm.TU.utg000013l.552 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008171 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10947, nbisL1-mrna-11723 |
| Salicaceae | Populus euphratica | 2 | populus_peu05539, populus_peu20943 |