Basic Information
Locus ID:
Ag6G00447
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 13056690 | 13068155 | + | Ag6G00447 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 87,774.76 Da | 48.92 | 76.84 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06613 | STKc_MAP4K3_like | 215 | 470 | 1.41611E-170 | - |
| Pfam | PF00069 | Protein kinase domain | 216 | 470 | 1.1E-68 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 215 | 471 | 5.66E-88 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 212 | 500 | 5.8E-98 | - |
| SMART | SM00220 | serkin_6 | 216 | 470 | 5.1E-98 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 216 | 470 | 50.011051 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 222 | 245 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 130 | - | - |
| Coils | Coil | Coil | 173 | 193 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69220.1 | Protein kinase superfamily protein. Encodes a putative serine/threonine kinase (SIK1). | 0 |
| RefSeq | XP_017236688.1 | PREDICTED: serine/threonine-protein kinase svkA isoform X1 [Daucus carota subsp. sativus] | 0 |
| O24527 | Serine/threonine-protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SIK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162AV84 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 20.537693 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.823111 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.712498 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 20.937016 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.728996 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 20.652109 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 18.017799 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.934402 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 35.478168 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 36.425877 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 36.903648 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 34.155182 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 29.717598 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 29.37929 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 22.947962 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 24.603659 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 24.432652 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.568415 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.125736 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 18.615881 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.627167 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 26.460674 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 27.568476 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 24.23959 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 23.294216 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 22.419926 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.440762 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.111122 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 22.495653 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.070219 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.220565 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.2634 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 11.251288 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.612125 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.107718 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.583365 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.834099 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.362875 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.290174 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.801415 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.776438 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.327566 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 22.293055 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 31.3643 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 31.134478 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.277397 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 31.372936 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 26.507786 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 25.399666 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 23.328043 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34836, jg9248 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18856 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007629 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g136320 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14035, Sbi_jg51923 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9948 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00023553, GOSA_00023554 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34859, Sgl40253 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003050, gene:ENSEOMG00000003646 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0016970, CQ.Regalona.r1.6BG0018080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30226970 |
| Apiaceae | Apium graveolens | 1 | Ag6G00447 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G011310 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704487 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1971.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G26331 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G69220.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018124m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g24270.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g046590.2N, BniB05g066160.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0426 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0436 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g03070 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0038s00019.v1.0, Dusal.0038s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g29670 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.391 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015287 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32591 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.692, CH01.674, Contig309.50 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0215610, gene-QOZ80_3BG0260700 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0511440.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061779 |
| Poaceae | Oryza coarctata | 2 | Oco05G023930, Oco06G024810 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g54780.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G076900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107228 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G028840, Chr07G027840, Chr12G037380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G623800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG057130, gene_TRIDC5BG061270 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G392500.1, TraesCS5B02G397300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb057640_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15100, nbis-gene-16203 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2767, Zma_g457 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.505, evm.TU.LG21.202 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g06300 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.533 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26694 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11802 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15830 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.267 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002699 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11398 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23529 |
| Salicaceae | Populus euphratica | 1 | populus_peu20715 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641950 |
| Solanaceae | Solanum chilense | 1 | SOLCI003152200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020616 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17948 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0468 |
| Zosteraceae | Zostera marina | 1 | Zosma06g22620.v3.1 |