Basic Information
Locus ID:
Ag6G00427
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Remorin, C-terminal region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 12401543 | 12403280 | - | Ag6G00427 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.66 | 41,052.94 Da | 55.00 | 55.21 | -1.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03763 | Remorin, C-terminal region | 257 | 358 | 7.7E-30 | IPR005516 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 347 | - | - |
| Coils | Coil | Coil | 267 | 309 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017234195.1 | PREDICTED: uncharacterized protein LOC108208204 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A161X5V9 | Remorin_C domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007182 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.717187 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.344821 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.902493 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.44266 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.569932 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.749266 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.687141 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.872573 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.84864 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.038601 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.347541 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.551892 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.565823 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.252799 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.69883 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.714057 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.619406 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.450656 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.27529 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 25.418165 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 40.585373 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.025572 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.757133 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 20.590979 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.753528 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.896256 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.014563 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.118658 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.597843 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.175538 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.354966 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.365625 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.941387 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.191204 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.303113 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.197568 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.510695 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.76089 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.694993 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.062755 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.195342 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.80782 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.929406 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.055242 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 21.26589 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 50.236221 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 67.097473 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg34809, jg842, jg9282 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13819, gene_3843 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000772 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g113980, BVRB_6g136990 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg13328, Sbi_jg31067, Sbi_jg31068, Sbi_jg52515 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25817, Seu_jg9325 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004679, GOSA_00013346 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl34450, Sgl39862, Sgl54749, Sgl60052 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000001130, gene:ENSEOMG00000003028 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0019930, CQ.Regalona.r1.5BG0021270 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30144630, pistato.v30144640, pistato.v30227110 |
| Apiaceae | Apium graveolens | 5 | Ag1G01478, Ag5G00578, Ag6G00427, Ag8G01069, AgUnG00956 |
| Arecaceae | Cocos nucifera | 3 | COCNU_05G002160, COCNU_06G016670, COCNU_13G005960 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696202, gene-LOC103709267, gene-LOC103718170 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.2040.V1.1, AsparagusV1_03.2681.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G16744, Ftri13G22270, Ftri18G27824 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G13920.1, AT1G69325.1, AT5G61280.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10004785m.g.v1.0, Thhalv10009533m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g12040.v2.2, Sp2g24510.v2.2, Sp5g24380.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g075940.2N, BniB03g005840.2N, BniB03g046700.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1834, Ceq07G1184 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G2002, Cgl07G1244 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g05280 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g05990 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.345, evm.TU.LG10.596 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00018685, Pov_00027038 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01386, Lb2G11714 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.4561, AH09.529, BH01.2513, BH09.681, CH09.649 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0121070, gene-QOZ80_2BG0175970 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0012110.1, HORVU.MOREX.r3.4HG0397520.2 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_008839, gene-QYE76_069845, gene-QYE76_069966 |
| Poaceae | Oryza coarctata | 5 | Oco05G006250, Oco06G006400, Oco06G006410, Oco19G002140 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os03g11300.1, LOC_Os10g17790.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G276900, gene-BS78_01G439600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0100186, Pt_Chr0101660, Pt_Chr0101677, Pt_Chr0500775 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G027370, Chr07G009810, Chr09G007230, Chr12G011960 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G120200, Tel4E01G426500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG007870, gene_TRIDC1BG009980 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G057900.1, TraesCS1B02G075600.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb008420_P005, Zm00001eb225120_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27579 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g15903, Zma_g1805 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.31, evm.TU.LG09.1297, evm.TU.LG13.456 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g11380 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_15_RagTag.572, evm.TU.Scaffold_15_RagTag.573 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-26741, nbisL1-mrna-28749, nbisL1-mrna-28750 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15797, nbisL1-mrna-1742 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.287, evm.TU.utg000008l.391 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000789, Maker00002548 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11376, nbisL1-mrna-14513 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1585 |
| Salicaceae | Populus euphratica | 3 | populus_peu06781, populus_peu20682, populus_peu28381 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132614499, gene-LOC132624296, gene-LOC132641991 |
| Solanaceae | Solanum chilense | 3 | SOLCI005437700, SOLCI005510600, SOLCI007454400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107017149, gene-LOC107018451, gene-LOC107022862 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.22726_chr05_-, gene_2292 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G3002, TC03G0836, TC08G2344 |
| Zosteraceae | Zostera marina | 1 | Zosma03g05240.v3.1 |