halophFGD

Basic Information

Locus ID: Ag6G00421

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: WRKY4

Description: WRKY transcription factor 4

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	12260864	12264426	-	Ag6G00421

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.29	54,822.94 Da	49.54	59.18	-0.75

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03106	WRKY DNA -binding domain	388	444	3.2E-25	IPR003657
Pfam	PF03106	WRKY DNA -binding domain	211	267	1.6E-24	IPR003657
SUPERFAMILY	SSF118290	WRKY DNA-binding domain	208	269	1.31E-25	IPR036576
SUPERFAMILY	SSF118290	WRKY DNA-binding domain	379	447	4.97E-29	IPR036576
Gene3D	G3DSA:2.20.25.80	WRKY domain	199	270	1.5E-27	IPR036576
Gene3D	G3DSA:2.20.25.80	WRKY domain	374	440	1.4E-35	IPR036576
SMART	SM00774	WRKY_cls	210	268	5.0E-36	IPR003657
SMART	SM00774	WRKY_cls	387	446	1.4E-38	IPR003657
ProSiteProfiles	PS50811	WRKY domain profile.	382	447	37.91795	IPR003657
ProSiteProfiles	PS50811	WRKY domain profile.	211	269	23.399036	IPR003657
MobiDBLite	mobidb-lite	consensus disorder prediction	184	209	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	323	366	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	334	362	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	184	206	-	-

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0003700 (DNA-binding transcription factor activity) GO:0043565 (sequence-specific DNA binding)

KEGG Pathway

KO Term:

K13424 (WRKY transcription factor 33)

Pathway:

ko04016 (MAPK signaling pathway - plant) map04016 (MAPK signaling pathway - plant) ko04626 (Plant-pathogen interaction) map04626 (Plant-pathogen interaction)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G13960.1	WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4).
RefSeq	XP_017231522.1	PREDICTED: probable WRKY transcription factor 3 [Daucus carota subsp. sativus]
Swiss-Prot	Q9XI90	Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2
TrEMBL	A0A166EBI3	WRKY domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007177 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	6.46141	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	4.95887	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	10.955229	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	10.675497	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	8.075016	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	21.998453	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	18.202042	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	34.429012	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	6.57886	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	9.779845	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	8.026875	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	5.542839	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	6.631565	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	5.266977	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	4.15275	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	4.69804	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	3.259754	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	3.688783	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.729652	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	3.941754	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	6.241563	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.695172	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.872272	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.466168	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.014595	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.771361	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	2.760114	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	2.651353	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.967004	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.687166		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.619299		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.678223		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	17.526207		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.864099		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	19.715389		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	7.003073		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	6.718188		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	7.118105		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	3.09042	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.188984	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.157992	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	4.473865	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	7.09105	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	5.26322	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	6.320681	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	4.470251	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	4.601751	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	5.668266	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	2.783004	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	3.841229	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg19773, jg34803, jg40231, jg7130
Aizoaceae	Mesembryanthemum crystallinum	2	gene_3826, gene_5152
Amaranthaceae	Atriplex hortensis	1	Ah013083
Amaranthaceae	Beta vulgaris	2	BVRB_2g040120, BVRB_6g153180
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg17453, Sbi_jg29714, Sbi_jg42996, Sbi_jg43233 ... Sbi_jg45604
Amaranthaceae	Salicornia europaea	3	Seu_jg11449, Seu_jg18663, Seu_jg709
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002085, GOSA_00004410, GOSA_00004411
Amaranthaceae	Suaeda glauca	5	Sgl35737, Sgl35742, Sgl41054, Sgl66472, Sgl70806
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000003876, gene:ENSEOMG00000012724 ... gene:ENSEOMG00000020342, gene:ENSEOMG00000028696, gene:ENSEOMG00000049171
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0006740, CQ.Regalona.r1.2BG0006980 ... CQ.Regalona.r1.6AG0000420, CQ.Regalona.r1.6BG0000410
Anacardiaceae	Pistacia vera	3	pistato.v30193740, pistato.v30194270, pistato.v30227300
Apiaceae	Apium graveolens	1	Ag6G00421
Arecaceae	Cocos nucifera	4	COCNU_05G002490, COCNU_06G016870, COCNU_13G006210 ... COCNU_14G010800
Arecaceae	Phoenix dactylifera	3	gene-LOC103700856, gene-LOC103705233, gene-LOC103707403
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2023.V1.1, AsparagusV1_07.3002.V1.1
Asteraceae	Flaveria trinervia	3	Ftri18G27418, Ftri1G17656, Ftri9G31125
Brassicaceae	Arabidopsis thaliana	3	AT1G13960.1, AT2G03340.1, AT3G01080.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10004015m.g.v1.0, Thhalv10007428m.g.v1.0 ... Thhalv10020676m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g12320.v2.2, Sp2g14270.v2.2, Sp3g01050.v2.2
Brassicaceae	Brassica nigra	5	BniB02g008880.2N, BniB02g065810.2N, BniB03g005870.2N ... BniB04g008710.2N, BniB06g038850.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G0192
Casuarinaceae	Casuarina glauca	2	Cgl07G0193, Cgl08G0308
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno06g10920
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g19820, gene.Thate02g36710
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-10280, nbisL1-mrna-10777, nbisL1-mrna-2212 ... nbisL1-mrna-5547
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.238, evm.TU.LG03.320
Plantaginaceae	Plantago ovata	2	Pov_00023595, Pov_00027062
Plumbaginaceae	Limonium bicolor	3	Lb1G00744, Lb2G13055, Lb2G14533
Poaceae	Echinochloa crus-galli	6	AH01.3253, AH05.3569, BH01.3638, BH05.3583, CH01.3826 ... CH05.3750
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0228830, gene-QOZ80_3BG0274980 ... gene-QOZ80_5AG0391820, gene-QOZ80_5BG0439390
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.4HG0376920.1, HORVU.MOREX.r3.5HG0448590.1
Poaceae	Lolium multiflorum	3	gene-QYE76_002176, gene-QYE76_066242, gene-QYE76_066298
Poaceae	Oryza coarctata	4	Oco05G016530, Oco06G017520, Oco23G007180, Oco24G006780
Poaceae	Oryza sativa	2	LOC_Os03g33012.1, LOC_Os12g32250.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G319000, gene-BS78_08G079900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0703567
Poaceae	Sporobolus alterniflorus	6	Chr01G023680, Chr04G013660, Chr04G015760, Chr06G016470 ... Chr19G010220, Chr27G006170
Poaceae	Thinopyrum elongatum	2	Tel4E01G303000, Tel5E01G198400
Poaceae	Triticum dicoccoides	4	gene_TRIDC4AG024620, gene_TRIDC4BG025790 ... gene_TRIDC5AG016180, gene_TRIDC5BG018010
Poaceae	Triticum aestivum	6	TraesCS4A02G162500.1, TraesCS4B02G165900.2 ... TraesCS4D02G151700.1, TraesCS5A02G104900.1, TraesCS5B02G108500.1, TraesCS5D02G116100.1
Poaceae	Zea mays	4	Zm00001eb020400_P001, Zm00001eb138040_P001 ... Zm00001eb264780_P001, Zm00001eb393300_P001
Poaceae	Zoysia japonica	3	nbis-gene-30177, nbis-gene-47232, nbis-gene-48631
Poaceae	Zoysia macrostachya	3	Zma_g25102, Zma_g25881, Zma_g3481
Portulacaceae	Portulaca oleracea	5	evm.TU.LG05.1212, evm.TU.LG12.1495, evm.TU.LG13.442 ... evm.TU.LG21.141, evm.TU.LG25.109
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g06620
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_15_RagTag.587, evm.TU.Scaffold_17_RagTag.397 ... evm.TU.Scaffold_6_RagTag.313
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-15172, nbisL1-mrna-2199, nbisL1-mrna-26755
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10440, nbisL1-mrna-10563, nbisL1-mrna-1281 ... nbisL1-mrna-14786
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-14929, nbisL1-mrna-15782, nbisL1-mrna-261 ... nbisL1-mrna-2934
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000001l.297, evm.TU.utg000011l.177 ... evm.TU.utg000013l.281, evm.TU.utg000019l.175
Rhizophoraceae	Kandelia obovata	4	Maker00002158, Maker00002518, Maker00006560, Maker00007416
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-11367, nbisL1-mrna-11781, nbisL1-mrna-12156 ... nbisL1-mrna-7193
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-14952, nbisL1-mrna-17308, nbisL1-mrna-18251 ... nbisL1-mrna-23488
Salicaceae	Populus euphratica	5	populus_peu00647, populus_peu06766, populus_peu09331 ... populus_peu20662, populus_peu37407
Solanaceae	Lycium barbarum	4	gene-LOC132616567, gene-LOC132622062, gene-LOC132626076 ... gene-LOC132642012
Solanaceae	Solanum chilense	3	SOLCI000554100, SOLCI005578500, SOLCI007268900
Solanaceae	Solanum pennellii	3	gene-LOC107011365, gene-LOC107014592, gene-LOC107018620
Tamaricaceae	Reaumuria soongarica	3	STRG.29428_chr10_-, STRG.588_chr01_+, gene_13658
Tamaricaceae	Tamarix chinensis	3	TC01G1247, TC01G3019, TC03G0814
Zosteraceae	Zostera marina	1	Zosma06g22370.v3.1