Basic Information
Locus ID:
Ag6G00409
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 12084714 | 12086852 | + | Ag6G00409 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.62 | 59,243.20 Da | 39.13 | 88.95 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 321 | 385 | 1.44E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 333 | 542 | 1.6E-5 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_007132434.1 | hypothetical protein PHAVU_011G094000g [Phaseolus vulgaris] | 0 |
| TrEMBL | V7AHS9 | F-box domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G094000g PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.286554 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.422055 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.379541 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.712364 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.541267 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.627686 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.907277 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.848575 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.200754 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.286146 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.567788 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.109762 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.958238 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.53982 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.313378 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.957168 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.219265 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.459606 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.425898 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.414928 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.320484 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.733961 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.375939 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.548166 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.417022 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.509013 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.386019 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.50467 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.235868 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.133181 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.175961 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.841509 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.137555 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.040856 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.08874 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.096891 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.625283 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.200758 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.348907 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.317986 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.085459 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.158914 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.19142 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.317082 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.394387 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.076438 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.722672 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15084, jg31960, jg3599 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5689 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah028963, Ah031130 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g159560 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2089, Sbi_jg34425 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2681 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002972 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl71168, Sgl73175, Sgl74750, Sgl76832 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004748, gene:ENSEOMG00000034266 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0019710, CQ.Regalona.r1.7AG0000860 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30056580 |
| Apiaceae | Apium graveolens | 4 | Ag3G00610, Ag6G00409, Ag6G00410, Ag6G02299 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G016500, scaffold003123G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103717995, gene-LOC103720034, gene-LOC120109237 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.643.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri2G12344, Ftri3G04433 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G67190.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018615m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g22120.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g044430.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G0663, Ceq05G1806 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0759, Cgl05G1797 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g09730 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g15190 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.682 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005516 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0040660, gene-QOZ80_1BG0090710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0300760.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056528 |
| Poaceae | Oryza coarctata | 2 | Oco01G025490, Oco02G026410 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g64030.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G344100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G003990, Chr03G020660, Chr05G029290 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G593800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG053540 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G372500.1, TraesCS3B02G404900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb147200_P001 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG19.1436 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g16020 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.548, evm.TU.Scaffold_13_RagTag.495 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24187, nbisL1-mrna-30609 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14392, nbisL1-mrna-8010 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15889, nbisL1-mrna-19878 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000015l.100, add.evm.TU.utg000027l.105 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015941, Maker00018075 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19029, nbisL1-mrna-4180 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12026, nbisL1-mrna-15291 |
| Salicaceae | Populus euphratica | 2 | populus_peu08445, populus_peu36902 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132600585, gene-LOC132605389, gene-LOC132607178 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI003073600, SOLCI003548700, SOLCI007454900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002407, gene-LOC107004347, gene-LOC107030651 |
| Tamaricaceae | Reaumuria soongarica | 10 | MSTRG.2833_chr02_-, MSTRG.2953_chr02_-, STRG.13616_chr05_- ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G4375 |
| Zosteraceae | Zostera marina | 1 | Zosma04g17320.v3.1 |