Basic Information
Locus ID:
Ag6G00392
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the GDA1 CD39 NTPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 11649143 | 11654303 | - | Ag6G00392 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 61,436.60 Da | 38.21 | 87.17 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 82 | 259 | 6.38186E-6 | - |
| Pfam | PF01150 | GDA1/CD39 (nucleoside phosphatase) family | 78 | 480 | 4.5E-73 | IPR000407 |
| Gene3D | G3DSA:3.30.420.150 | Exopolyphosphatase. Domain 2 | 201 | 464 | 1.9E-98 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 80 | 476 | 1.9E-98 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Reaction:
R00086 (ATP + H2O <=> ADP + Orthophosphate)
R00122 (ADP + H2O <=> AMP + Orthophosphate)
R00155 (UDP + H2O <=> UMP + Orthophosphate)
R00159 (UTP + H2O <=> UDP + Orthophosphate)
R00328 (GDP + H2O <=> GMP + Orthophosphate)
R00335 (GTP + H2O <=> GDP + Orthophosphate)
R00514 (CDP + H2O <=> CMP + Orthophosphate)
R00569 (CTP + H2O <=> CDP + Orthophosphate)
R00719 (ITP + H2O <=> IDP + Orthophosphate)
R00961 (IDP + H2O <=> IMP + Orthophosphate)
R02092 (dTDP + H2O <=> dTMP + Orthophosphate)
R02095 (dTTP + H2O <=> dTDP + Orthophosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02970.1 | GDA1/CD39 nucleoside phosphatase family protein. | 0 |
| RefSeq | XP_017236280.1 | PREDICTED: probable apyrase 6 isoform X1 [Daucus carota subsp. sativus] | 0 |
| O80612 | Probable apyrase 6 OS=Arabidopsis thaliana OX=3702 GN=APY6 PE=2 SV=2 | 0 | |
| TrEMBL | A0A166EAT5 | Apyrase 6 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007153 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.565788 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.86001 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.903543 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 16.451172 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 15.996127 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.799589 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.950826 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.174577 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 27.367174 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 27.171268 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 28.753817 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 36.09087 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 29.262726 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 25.902233 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 32.719013 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 32.568424 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 40.351013 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 35.04837 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 24.488155 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 25.049852 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 26.398132 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 29.661261 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 27.857662 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 27.550932 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 28.697918 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 28.651009 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 31.955698 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 25.966291 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 35.360714 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.905255 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.358505 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.295651 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.655934 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 40.428928 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 14.413528 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 14.401593 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 9.804262 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.912663 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.020023 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.773487 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.556076 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 25.251629 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 25.086441 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 38.619774 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 38.693241 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 24.853029 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 46.946407 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 36.388233 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 84.549599 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 67.053673 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34768, jg9339 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3784 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014125 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g153890 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42508, Sbi_jg45140 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27032 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002764 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl35597, Sgl35681, Sgl40933 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000992, gene:ENSEOMG00000012520 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0001080, CQ.Regalona.r1.6BG0001090 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30027360 |
| Apiaceae | Apium graveolens | 1 | Ag6G00392 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G007580, COCNU_03G005800, COCNU_13G002460 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716401, gene-LOC103718805 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.35.V1.1, AsparagusV1_07.3531.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G24261, Ftri5G20909 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G14230.1, AT1G14240.1, AT1G14250.1, AT2G02970.1 |
| Brassicaceae | Eutrema salsugineum | 6 | Thhalv10003943m.g.v1.0, Thhalv10007159m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g12580.v2.2, Sp1g12590.v2.2, Sp1g12600.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB01g037420.2N, BniB02g009330.2N, BniB02g065670.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0114 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0103 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g11560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0254s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g12350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.253 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00027150, Pov_00029062 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01631 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.3463, BH01.3826, BH08.1704, CH08.1851 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0250120, gene-QOZ80_3BG0277990 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.1HG0049370.1, HORVU.MOREX.r3.6HG0556250.2 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031413, gene-QYE76_048198 |
| Poaceae | Oryza coarctata | 4 | Oco05G014690, Oco06G015050, Oco15G009160, Oco16G008590 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g26080.1, LOC_Os08g33850.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G339400, gene-BS78_07G146500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102865, Pt_Chr0405391 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G035640, Chr04G012370, Chr04G012380, Chr07G011800 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G238200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC6AG013710, gene_TRIDC6BG019260 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS6A02G105900.1, TraesCS6B02G135200.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb018380_P002, Zm00001eb041370_P003 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1432 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1118, Zma_g24114 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.241, evm.TU.LG12.1462, evm.TU.LG13.392 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g28510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.623 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26802 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4846 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15750 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.321 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002455 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11342 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17871 |
| Salicaceae | Populus euphratica | 2 | populus_peu06719, populus_peu20616 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642079 |
| Solanaceae | Solanum chilense | 1 | SOLCI002164300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020755 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.29341_chr10_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0581 |
| Zosteraceae | Zostera marina | 1 | Zosma06g17170.v3.1 |