Basic Information
Locus ID:
Ag6G00389
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
TATA box-binding protein-associated factor RNA polymerase I subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 11628509 | 11632852 | + | Ag6G00389 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 81,002.55 Da | 56.65 | 73.42 | -0.49 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02955.1 | maternal effect embryo arrest 12. | 0 |
| RefSeq | XP_017231228.1 | PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit B [Daucus carota subsp. sativus] | 0 |
| Q5XVF0 | TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Arabidopsis thaliana OX=3702 GN=MEE12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166EAS6 | TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007151 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.402165 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.699628 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.442041 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.109171 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.425238 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.784301 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.846208 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.984404 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.072972 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.16871 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 7.092296 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.174277 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.283796 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.076558 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.121963 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.662039 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.717488 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.346487 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.726982 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.342192 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.038164 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.02313 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.175295 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.650853 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.23729 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.515227 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.863601 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.339244 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.336224 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.728059 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.54346 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.068941 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.23365 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.827521 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.741085 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.289684 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.876783 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.892294 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.108352 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.325785 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.578994 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.356692 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.55514 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.089414 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.70584 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.468607 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.573197 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.743412 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.915668 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.088241 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2700 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_18242, gene_18243 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003119, Ah014120 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_5g121580, BVRB_6g153940, BVRB_9g222130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42513, Sbi_jg45144 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27027 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005681 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl35554, Sgl35586, Sgl35587, Sgl35593, Sgl40919, Sgl40920 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002558, gene:ENSEOMG00000012737 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0001130 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30027330 |
| Apiaceae | Apium graveolens | 4 | Ag10G00071, Ag6G00389, Ag6G00413, Ag6G00415 |
| Arecaceae | Cocos nucifera | 2 | COCNU_09G004120, scaffold009484G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706392 |
| Asparagaceae | Asparagus officinalis | 6 | AsparagusV1_10.378.V1.1, AsparagusV1_10.379.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G05306 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G02955.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004418m.g.v1.0, Thhalv10027666m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g05500.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g001510.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G0109, Ceq07G1838 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G0100, Cgl07G2010 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07350 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0050s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate01g07870, gene.Thate05g04920, gene.Thate07g06160 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.248 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00005501, Pov_00012842, Pov_00012853, Pov_00019322 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27063 |
| Poaceae | Echinochloa crus-galli | 7 | AH05.2866, AH08.587, BH05.2884, BH05.2962, BH09.89, CH09.32 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0327260, gene-QOZ80_4BG0359220 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0062080.1, HORVU.MOREX.r3.6HG0543620.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_000925, gene-QYE76_012962, gene-QYE76_019569 |
| Poaceae | Oryza coarctata | 2 | Oco09G007110, Oco10G007380 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g28460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G180500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0503512 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G022250 |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G376600, Tel6E01G090300, Tel6E01G090500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG033680, gene_TRIDC1BG039040 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G223100.1, TraesCS1B02G236400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb284870_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17773, nbis-gene-52464 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27975 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.243, evm.TU.LG12.1459 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g15970, gene.Posoc05g12530 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.450 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2025 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9715 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.688 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2577 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16533 |
| Salicaceae | Populus euphratica | 1 | populus_peu20612 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600708 |
| Solanaceae | Solanum chilense | 2 | SOLCI002775700, SOLCI006502900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004800, gene-LOC107031274 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.3942_chr02_-, gene_13396 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G2118 |
| Zosteraceae | Zostera marina | 1 | Zosma01g37930.v3.1 |