Basic Information
Locus ID:
Ag6G00361
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Inactive receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 10935390 | 10937620 | + | Ag6G00361 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 66,839.77 Da | 30.93 | 95.31 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 307 | 577 | 7.20001E-89 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 65 | 2.7E-4 | IPR013210 |
| Pfam | PF13516 | Leucine Rich repeat | 92 | 107 | 0.029 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 322 | 577 | 6.2E-29 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 276 | 577 | 8.97E-60 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 23 | 198 | 2.65E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 212 | 1.3E-46 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 259 | 373 | 1.3E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 374 | 592 | 7.4E-53 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 95 | 116 | 7.319219 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 299 | 587 | 28.046816 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27190.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017235174.1 | PREDICTED: probable inactive receptor kinase At1g27190 [Daucus carota subsp. sativus] | 0 |
| O04567 | Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana OX=3702 GN=At1g27190 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166E9Z5 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007119 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.983637 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.181879 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.643213 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.005907 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.973308 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.126882 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.309965 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.641127 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 55.666763 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 51.106056 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 56.160076 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 48.942322 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 41.681633 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 40.975323 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 21.313354 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 33.801582 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 42.923771 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 36.965023 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 29.150337 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.439085 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 23.410006 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 37.812965 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 37.518085 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 42.558361 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 37.771191 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 39.318615 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 53.3102 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 33.741623 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 43.59869 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.022727 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.868676 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.568202 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 18.164736 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 21.504053 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.647467 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 14.768183 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.396993 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 11.801254 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 43.988487 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 26.154274 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.678361 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.973973 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 9.645605 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 17.805784 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 25.746861 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.506638 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 40.114861 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 24.254234 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 27.87554 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 27.316004 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg17839, jg30500, jg30502, jg40308 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16615, gene_3693 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013397, Ah029174 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g155300, BVRB_7g166660 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg1126, Sbi_jg35457, Sbi_jg43040, Sbi_jg45642 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11486, Seu_jg3577 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002038, GOSA_00022852 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl35794, Sgl41103, Sgl74292, Sgl74320, Sgl77857 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000002822, gene:ENSEOMG00000006227 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0006720, CQ.Regalona.r1.6BG0007130 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30174030, pistato.v30224150 |
| Apiaceae | Apium graveolens | 2 | Ag4G00834, Ag6G00361 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G013030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714760 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_09.1147.V1.1, AsparagusV1_09.625.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G01787, Ftri18G19386, Ftri18G26232, FtriNA14638 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G27190.1, AT1G69990.1, AT3G28450.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10003844m.g.v1.0, Thhalv10009684m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g21580.v2.2, Sp2g17210.v2.2, Sp5g25100.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g068240.2N, BniB03g047720.2N, BniB04g006930.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0879 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G1823, Cgl02G1825, Cgl07G0925 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g06540, gene.Cymno03g08730, gene.Cymno18g01080 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g26240 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.120, evm.TU.LG03.873 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023422 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G38344, Lb2G12998 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0312890, gene-QOZ80_4BG0344050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0176990.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044785 |
| Poaceae | Oryza coarctata | 2 | Oco07G009110, Oco08G009010 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g41030.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G141100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307203 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr02G026870, Chr08G021260, Chr12G021780, Chr14G005300 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G598000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG050070, gene_TRIDC2BG053060 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G346000.1.cds1, TraesCS2B02G364400.1.cds1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb079130_P001, Zm00001eb101970_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-36928, nbis-gene-7355 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19946, Zma_g21497 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG02.2563, evm.TU.LG05.781, evm.TU.LG13.277 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g21260 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_15_RagTag.672, evm.TU.Scaffold_17_RagTag.299 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-15038, nbisL1-mrna-23030, nbisL1-mrna-26851 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-4109, nbisL1-mrna-5994, nbisL1-mrna-677 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-14825, nbisL1-mrna-15711, nbisL1-mrna-181 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000001l.204, add.evm.TU.utg000011l.52 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006698, Maker00007139 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-21206, nbisL1-mrna-21476 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17394, nbisL1-mrna-17828 |
| Salicaceae | Populus euphratica | 5 | populus_peu01033, populus_peu09715, populus_peu23304 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132621722, gene-LOC132625005, gene-LOC132626556 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI002230100, SOLCI003763100, SOLCI005193700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107008771, gene-LOC107011426, gene-LOC107018701 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.26274_chr11_-, STRG.29502_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G1216, TC12G0178 |