Basic Information
Locus ID:
Ag6G00354
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 10851590 | 10853288 | - | Ag6G00354 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 44,683.59 Da | 36.46 | 79.36 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 60 | 403 | 3.19624E-48 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 351 | 402 | 0.0038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 217 | 253 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 312 | 342 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 182 | 211 | 7.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 298 | 9.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 59 | 94 | 0.0093 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 55 | 403 | 2.2E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 167 | 260 | 1.3E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 50 | 166 | 7.3E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 261 | 406 | 1.9E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 57 | 94 | 3.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 349 | 403 | 5.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 104 | 138 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 343 | 4.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 3.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 299 | 1.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 254 | 1.4E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 342 | 9.309238 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 64 | 103 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 223 | 253 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 211 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 299 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 64 | 94 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 352 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 267 | 299 | 10.785595 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 3.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 330 | 344 | 3.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 390 | 404 | 3.8E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24130.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017233987.1 | PREDICTED: uncharacterized WD repeat-containing protein alr2800-like [Daucus carota subsp. sativus] | 0 |
| O48716 | Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1 | 0 | |
| TrEMBL | A0A162AUZ8 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.425057 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.519369 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.98865 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.388641 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.194583 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.602353 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.462186 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.075946 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.316203 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.47856 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.436015 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.403315 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.021072 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.967362 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.037727 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.03371 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.387182 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.431205 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.230767 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.763654 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.29428 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.441753 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.69242 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.326276 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.833407 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.954909 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.055943 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.963457 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.403439 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.956381 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.477727 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.899693 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.655599 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.458437 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.494175 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.16381 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.469917 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.087157 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.820392 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.064289 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.905991 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.140714 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.019766 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.941836 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.6192 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 20.8391 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.343449 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.180288 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.14486 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.28299 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology