Basic Information
Locus ID:
Ag6G00348
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Involved in the biogenesis of the 60S ribosomal subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 10676684 | 10680574 | + | Ag6G00348 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.47 | 76,484.13 Da | 41.88 | 82.51 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01897 | NOG | 169 | 355 | 1.58469E-96 | - |
| Pfam | PF06858 | Nucleolar GTP-binding protein 1 (NOG1) | 236 | 292 | 1.3E-24 | IPR010674 |
| Pfam | PF17835 | NOG1 N-terminal helical domain | 6 | 165 | 3.1E-57 | IPR041623 |
| Pfam | PF08155 | NOGCT (NUC087) domain | 410 | 463 | 4.4E-28 | IPR012973 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 48 | 311 | 1.51E-37 | IPR027417 |
| Gene3D | G3DSA:1.20.120.1190 | - | 3 | 161 | 4.0E-60 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 162 | 374 | 9.6E-52 | IPR027417 |
| PIRSF | PIRSF038919 | NOG1 | 1 | 669 | 1.5E-266 | IPR024926 |
| ProSiteProfiles | PS51710 | OBG-type guanine nucleotide-binding (G) domain profile. | 169 | 355 | 37.71048 | IPR031167 |
| PRINTS | PR00326 | GTP1/OBG GTP-binding protein family signature | 192 | 210 | 9.8E-8 | IPR006073 |
| PRINTS | PR00326 | GTP1/OBG GTP-binding protein family signature | 171 | 191 | 9.8E-8 | IPR006073 |
| PRINTS | PR00326 | GTP1/OBG GTP-binding protein family signature | 219 | 234 | 9.8E-8 | IPR006073 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 569 | 592 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 631 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 492 | - | - |
| Coils | Coil | Coil | 395 | 422 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50920.1 | Nucleolar GTP-binding protein. | 0 |
| RefSeq | XP_017235695.1 | PREDICTED: nucleolar GTP-binding protein 1-like [Daucus carota subsp. sativus] | 0 |
| Q9C6I8 | Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=At1g50920 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161X5Q1 | Nucleolar GTP-binding protein 1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007102 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 25.764881 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 20.679209 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.405494 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.450079 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.685058 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.154617 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.876062 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.765114 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.055254 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 21.350426 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.29385 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 29.642202 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 32.091431 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.265219 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.56516 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.921302 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.284777 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.746802 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.581329 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 16.890024 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.887203 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 20.371212 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 20.93618 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 18.098831 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.868668 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 14.705715 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.338322 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.215581 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 14.468697 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.601618 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 18.680374 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 17.506334 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 25.329033 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 23.375278 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 26.977016 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 16.326258 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.790106 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.143018 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.266725 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.682045 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.343055 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 39.847874 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 25.364714 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 105.037712 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 61.097889 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 46.122948 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 97.437683 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 25.895805 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.7013 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.200222 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg34663, jg34664, jg9436 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_19863, gene_3483, gene_6706 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah018226, Ah022463 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g159190, BVRB_8g196300 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg15211, Sbi_jg15212, Sbi_jg15213, Sbi_jg17870 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1066, Seu_jg26508 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007166 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl12089, Sgl12285, Sgl17382, Sgl17515 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000001336, gene:ENSEOMG00000008789 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3BG0008910, CQ.Regalona.r1.8AG0017660 ... |
| Apiaceae | Apium graveolens | 2 | Ag1G01350, Ag6G00348 |
| Arecaceae | Cocos nucifera | 2 | COCNU_10G008390, contig69665468G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707749, gene-LOC103719553 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.203.V1.1, AsparagusV1_10.1894.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G11877, Ftri18G29747 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G10300.1, AT1G50920.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006811m.g.v1.0, Thhalv10009939m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g03550.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g052800.2N, BniB03g001040.2N, BniB04g029400.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0240 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0245 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g00300 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0556s00014.v1.0, Dusal.0556s00015.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g05150 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6064 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG05.712, evm.TU.LG05.713, evm.TU.LG07.896 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003516, Pov_00024791 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G36742 |
| Poaceae | Echinochloa crus-galli | 5 | AH06.639, BH06.710, BH07.1878, CH06.734, CH07.1744 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6AG0512260, gene-QOZ80_6BG0464140 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0661600.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_018801, gene-QYE76_020049, gene-QYE76_050359 ... |
| Poaceae | Oryza coarctata | 2 | Oco11G004460, Oco12G004410 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g09570.1, LOC_Os07g01920.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G297100, gene-BS78_10G073900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0405154 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr03G009720, Chr08G010050, Chr11G021000, Chr14G003150 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel5E01G072400, Tel5E01G534400, Tel5E01G534500 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC5AG004330, gene_TRIDC5AG049580 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS4D02G022000.1.cds1, TraesCS5A02G030200.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb278540_P002, Zm00001eb373990_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34957 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29268, Zma_g31516 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.885, evm.TU.LG11.1448, evm.TU.LG12.850 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g00640 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.17, evm.TU.Scaffold_13_RagTag.1052 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24783, nbisL1-mrna-29968 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3545 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16415, nbisL1-mrna-23096 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.635 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015496 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4535 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20748 |
| Salicaceae | Populus euphratica | 3 | populus_peu01924, populus_peu02380, populus_peu35883 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645151 |
| Solanaceae | Solanum chilense | 1 | SOLCI005586700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002805, gene-LOC107026471 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12564, gene_8169 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G1687, TC11G1415 |
| Zosteraceae | Zostera marina | 2 | Zosma04g24140.v3.1, Zosma04g24170.v3.1 |