Basic Information
Locus ID:
Ag6G00345
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 10638019 | 10638798 | - | Ag6G00345 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 10,244.58 Da | 69.46 | 60.23 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 39 | 82 | 1.6E-6 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 30 | 88 | 1.3E-11 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24030.5 | - | 0 |
| RefSeq | XP_017236429.1 | PREDICTED: serine/threonine-protein kinase PBS1-like isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q84M95 | Probable serine/threonine-protein kinase PBL28 OS=Arabidopsis thaliana OX=3702 GN=PBL28 PE=2 SV=1 | 0 | |
| TrEMBL | A0A162AUY7 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.938708 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.102625 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.127806 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 23.200174 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 27.991949 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.703294 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.368372 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.493647 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.514513 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.149508 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 3.055499 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 31.561119 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 45.077667 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 40.435253 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.090469 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.086802 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.070805 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.369293 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.921491 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.257566 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.776361 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.206322 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.84511 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.406601 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.855917 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.2625 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.038746 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.282344 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.534058 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.214365 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.516873 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.01274 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.228323 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.589094 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.217981 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.357484 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.023294 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.383488 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.225948 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.425577 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.135507 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.402207 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.533161 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.735743 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.085401 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34655, jg9440 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18159 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g149410 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42294, Sbi_jg44883 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27246 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002364 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl40752, Sgl40783 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000003686, gene:ENSEOMG00000015929 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0006320 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30222850 |
| Apiaceae | Apium graveolens | 3 | Ag6G00344, Ag6G00345, Ag8G02204 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G009300 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2381.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G21464 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G24030.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008007m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g21360.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g039300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0823 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0878 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g10600 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g25810 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1103 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020237 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01002 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1758, BH03.1914, CH03.2098 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0533870, gene-QOZ80_6BG0486930 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0477460.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_004846 |
| Poaceae | Oryza coarctata | 1 | Oco18G003740 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g20880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G168900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702437 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G011070, Chr11G011210, Chr11G011370, Chr14G013120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G331700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG032020, gene_TRIDC5BG033670 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G187300.1, TraesCS5B02G196600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb098860_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32482 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG13.254 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g07130 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.266 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-23061, nbisL1-mrna-23062 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6288 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14793 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.185 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7092 |
| Salicaceae | Populus euphratica | 2 | populus_peu07316, populus_peu21310 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641396 |
| Solanaceae | Solanum chilense | 1 | SOLCI007241100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020696 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2923 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0955 |