halophFGD

Basic Information

Locus ID: Ag6G00344

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	10636638	10638016	-	Ag6G00344

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.12	22,959.29 Da	44.30	93.15	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	10	180	1.2E-27	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	1	191	5.06E-45	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	1	199	6.4E-52	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	1	186	25.163479	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	30	42	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G24030.6	-
RefSeq	XP_017236429.1	PREDICTED: serine/threonine-protein kinase PBS1-like isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	Q84M95	Probable serine/threonine-protein kinase PBL28 OS=Arabidopsis thaliana OX=3702 GN=PBL28 PE=2 SV=1
TrEMBL	A0A162AUY7	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007100 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.950451	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	9.671264	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	17.161669	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	20.792168	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	22.743538	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	7.72262	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	11.017185	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.845664	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	3.805673	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	6.746292	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.436947	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	34.601593	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	52.748684	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	49.852425	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.192058	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.833208	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.505525	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.069257	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	2.707151	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.351964	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	6.205142	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	6.551829	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	4.706698	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	4.430774	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	4.285538	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	2.744565	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	3.190933	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	3.009438	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.08627		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.691673		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.837375		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.019501		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.785189		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.394126		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.056796		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.905578	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.748312	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.560487	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.089143	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.215534	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.263513	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.984978	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.378615	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	12.345179	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	16.107578	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	14.971312	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	4.350091	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg34655, jg9440
Aizoaceae	Mesembryanthemum crystallinum	1	gene_18159
Amaranthaceae	Beta vulgaris	1	BVRB_6g149410
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg42294, Sbi_jg44883
Amaranthaceae	Salicornia europaea	1	Seu_jg27246
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00002364
Amaranthaceae	Suaeda glauca	2	Sgl40752, Sgl40783
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000003686, gene:ENSEOMG00000015929
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.6BG0006320
Anacardiaceae	Pistacia vera	1	pistato.v30222850
Apiaceae	Apium graveolens	3	Ag6G00344, Ag6G00345, Ag8G02204
Arecaceae	Cocos nucifera	1	COCNU_01G009300
Asparagaceae	Asparagus officinalis	1	AsparagusV1_05.2381.V1.1
Asteraceae	Flaveria trinervia	1	Ftri9G21464
Brassicaceae	Arabidopsis thaliana	1	AT1G24030.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10008007m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g21360.v2.2
Brassicaceae	Brassica nigra	1	BniB04g039300.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G0823
Casuarinaceae	Casuarina glauca	1	Cgl07G0878
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno06g10600
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g25810
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG03.1103
Plantaginaceae	Plantago ovata	1	Pov_00020237
Plumbaginaceae	Limonium bicolor	1	Lb1G01002
Poaceae	Echinochloa crus-galli	3	AH03.1758, BH03.1914, CH03.2098
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0533870, gene-QOZ80_6BG0486930
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.5HG0477460.1
Poaceae	Lolium multiflorum	1	gene-QYE76_004846
Poaceae	Oryza coarctata	1	Oco18G003740
Poaceae	Oryza sativa	1	LOC_Os09g20880.1
Poaceae	Paspalum vaginatum	1	gene-BS78_02G168900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0702437
Poaceae	Sporobolus alterniflorus	4	Chr10G011070, Chr11G011210, Chr11G011370, Chr14G013120
Poaceae	Thinopyrum elongatum	1	Tel5E01G331700
Poaceae	Triticum dicoccoides	2	gene_TRIDC5AG032020, gene_TRIDC5BG033670
Poaceae	Triticum aestivum	3	TraesCS5A02G187300.1, TraesCS5B02G196600.1 ... TraesCS5D02G203800.1
Poaceae	Zea mays	1	Zm00001eb098860_P001
Poaceae	Zoysia macrostachya	1	Zma_g32482
Portulacaceae	Portulaca oleracea	1	evm.TU.LG13.254
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g07130
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_17_RagTag.266
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-23061, nbisL1-mrna-23062
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-6288
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-14793
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000013l.185
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-7092
Salicaceae	Populus euphratica	2	populus_peu07316, populus_peu21310
Solanaceae	Lycium barbarum	1	gene-LOC132641396
Solanaceae	Solanum chilense	1	SOLCI007241100
Solanaceae	Solanum pennellii	1	gene-LOC107020696
Tamaricaceae	Reaumuria soongarica	1	gene_2923
Tamaricaceae	Tamarix chinensis	1	TC11G0955