Basic Information
Locus ID:
Ag6G00335
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Aldehyde dehydrogenase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 10410989 | 10421464 | - | Ag6G00335 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 57,841.89 Da | 49.80 | 61.98 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04749 | PLAC8 family | 147 | 251 | 2.8E-24 | IPR006461 |
| Pfam | PF00171 | Aldehyde dehydrogenase family | 378 | 509 | 1.1E-45 | IPR015590 |
| SUPERFAMILY | SSF53720 | ALDH-like | 287 | 508 | 5.31E-56 | IPR016161 |
| Gene3D | G3DSA:3.40.309.10 | Aldehyde Dehydrogenase; Chain A, domain 2 | 434 | 516 | 4.0E-27 | IPR016163 |
| Gene3D | G3DSA:3.40.605.10 | Aldehyde Dehydrogenase; Chain A, domain 1 | 324 | 379 | 2.1E-12 | IPR016162 |
| Gene3D | G3DSA:3.40.605.10 | Aldehyde Dehydrogenase; Chain A, domain 1 | 380 | 433 | 1.4E-16 | IPR016162 |
| TIGRFAM | TIGR01571 | A_thal_Cys_rich: uncharacterized Cys-rich domain | 146 | 252 | 4.2E-31 | IPR006461 |
| ProSitePatterns | PS00687 | Aldehyde dehydrogenases glutamic acid active site. | 430 | 437 | - | IPR029510 |
| ProSitePatterns | PS00070 | Aldehyde dehydrogenases cysteine active site. | 458 | 469 | - | IPR016160 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 521 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 521 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
ko00010 (Glycolysis / Gluconeogenesis)
map00010 (Glycolysis / Gluconeogenesis)
ko00053 (Ascorbate and aldarate metabolism)
map00053 (Ascorbate and aldarate metabolism)
ko00071 (Fatty acid degradation)
map00071 (Fatty acid degradation)
ko00280 (Valine, leucine and isoleucine degradation)
map00280 (Valine, leucine and isoleucine degradation)
ko00310 (Lysine degradation)
map00310 (Lysine degradation)
ko00330 (Arginine and proline metabolism)
map00330 (Arginine and proline metabolism)
ko00340 (Histidine metabolism)
map00340 (Histidine metabolism)
ko00380 (Tryptophan metabolism)
map00380 (Tryptophan metabolism)
ko00410 (beta-Alanine metabolism)
map00410 (beta-Alanine metabolism)
ko00561 (Glycerolipid metabolism)
map00561 (Glycerolipid metabolism)
ko00620 (Pyruvate metabolism)
map00620 (Pyruvate metabolism)
ko00625 (Chloroalkane and chloroalkene degradation)
map00625 (Chloroalkane and chloroalkene degradation)
ko00903 (Limonene degradation)
map00903 (Limonene degradation)
ko00981 (Insect hormone biosynthesis)
map00981 (Insect hormone biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
Reaction:
R00264 (2,5-Dioxopentanoate + NADP+ + H2O <=> 2-Oxoglutarate + NADPH + H+)
R00631 (Aldehyde + NAD+ + H2O <=> Fatty acid + NADH + H+)
R00710 (Acetaldehyde + NAD+ + H2O <=> Acetate + NADH + H+)
R00904 (3-Aminopropanal + NAD+ + H2O <=> beta-Alanine + NADH + H+)
R01752 (D-Glyceraldehyde + NAD+ + H2O <=> D-Glycerate + NADH + H+)
R01986 (4-Aminobutyraldehyde + NADP+ + H2O <=> 4-Aminobutanoate + NADPH + H+)
R02549 (4-Aminobutyraldehyde + NAD+ + H2O <=> 4-Aminobutanoate + NADH + H+)
R02678 (Indole-3-acetaldehyde + NAD+ + H2O <=> Indole-3-acetate + NADH + H+)
R02940 (2-Propynal + NAD+ + H2O <=> Propynoate + NADH + H+)
R02957 (D-Glucuronolactone + NAD+ + 2 H2O <=> D-Glucarate + NADH + H+)
R03283 (4-Trimethylammoniobutanal + NAD+ + H2O <=> 4-Trimethylammoniobutanoate + NADH + H+)
R03869 ((S)-Methylmalonate semialdehyde + NAD+ + H2O <=> Methylmalonate + NADH + H+)
R04065 (Imidazole-4-acetaldehyde + NAD+ + H2O <=> Imidazole-4-acetate + NADH + H+)
R04506 (3alpha,7alpha-Dihydroxy-5beta-cholestan-26-al + NAD+ + H2O <=> 3alpha,7alpha-Dihydroxy-5beta-cholestanate + NADH + H+)
R04903 (5-Hydroxyindoleacetaldehyde + NAD+ + H2O <=> 5-Hydroxyindoleacetate + H+ + NADH)
R05050 (N4-Acetylaminobutanal + NAD+ + H2O <=> 4-Acetamidobutanoate + NADH + H+)
R05237 (trans-3-Chloroallyl aldehyde + H2O <=> trans-3-Chloroacrylic acid + 2 H+)
R05238 (cis-3-Chloroallyl aldehyde + H2O <=> cis-3-Chloroacrylic acid + 2 H+)
R05286 (Chloroacetaldehyde + NAD+ + H2O <=> Chloroacetic acid + NADH + H+)
R06366 (Perillyl aldehyde + H2O + NAD+ <=> Perillic acid + NADH + H+)
R08146 (2-trans,6-trans-Farnesal + NAD+ + H2O <=> Farnesoic acid + NADH + H+)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23800.2 | - | 0 |
| RefSeq | XP_017234457.1 | PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Daucus carota subsp. sativus] | 0 |
| C7A2A0 | Benzaldehyde dehydrogenase, mitochondrial OS=Antirrhinum majus OX=4151 GN=BALDH PE=1 SV=1 | 0 | |
| TrEMBL | A0A166E999 | Aldedh domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007094 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.948638 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.307179 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.869838 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.387085 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.049227 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.445377 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.971799 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.062364 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.675119 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.228081 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.115254 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.874515 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.614287 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.575533 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 94.822075 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.313504 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.198312 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.34761 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 90.07019 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 90.967628 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology