Basic Information
Locus ID:
Ag6G00319
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
negative regulation of protein maturation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 9963048 | 9966579 | + | Ag6G00319 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 36,945.40 Da | 42.17 | 81.68 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 284 | 323 | 8.3E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 275 | 333 | 9.2E-10 | IPR013083 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 1 | 333 | 3.7E-85 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 286 | 321 | 9.405901 | IPR001841 |
| Coils | Coil | Coil | 185 | 212 | - | - |
| Coils | Coil | Coil | 137 | 157 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10650.1 | SBP (S-ribonuclease binding protein) family protein. | 0 |
| RefSeq | XP_017236923.1 | PREDICTED: E3 ubiquitin-protein ligase BOI [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166E8P1 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007075 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 30.493507 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 32.363602 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 27.715601 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 30.365442 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 28.362604 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 29.653103 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 23.30286 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 42.707592 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 32.480648 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 31.19199 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 31.064859 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 39.118793 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 28.104887 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 27.501429 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.825749 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.968088 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.415571 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 19.463688 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 18.856556 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.866869 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 21.589678 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 52.447857 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 58.119404 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 48.329391 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 43.998421 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 26.35421 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 24.393316 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.489613 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 23.612867 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.432255 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.769649 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.135254 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 35.373127 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 32.40733 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 32.461716 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 24.623781 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.339917 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 17.140028 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.530721 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.752704 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.776709 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 51.387787 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 53.146336 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 14.541135 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.824711 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 35.744652 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 26.601353 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 27.60902 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 35.257732 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 36.124249 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18757, jg9477 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_18120, gene_19510 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah000598, Ah013588, Ah019643 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g117250, BVRB_6g148610 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg30545, Sbi_jg42906, Sbi_jg45516, Sbi_jg58701 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11363, Seu_jg28568 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002440, GOSA_00014934 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35324, Sgl40681, Sgl55223, Sgl60472 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000000722, gene:ENSEOMG00000005449 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0023110, CQ.Regalona.r1.5BG0024550 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30139350, pistato.v30222120 |
| Apiaceae | Apium graveolens | 1 | Ag6G00319 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G000270 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723535 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2216.V1.1, AsparagusV1_06.792.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri13G18350, Ftri18G09093, Ftri1G05829, Ftri3G22299 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G10650.1, AT1G60610.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008132m.g.v1.0, Thhalv10023576m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g09340.v2.2, Sp2g04120.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g004060.2N, BniB04g028930.2N, BniB07g046520.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G1947, Ceq07G1392 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G2134, Cgl07G1479 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g03640 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11077 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2865, evm.TU.LG10.745 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022134, Pov_00022388 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24049, Lb4G24059 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.279, BH07.344, CH03.4560 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0100600 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0552460.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020002 |
| Poaceae | Oryza coarctata | 2 | Oco03G001690, Oco04G001560 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g03760.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G025100, gene-BS78_04G025400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201330 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G011370, Chr0G011700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G210600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG010370, gene_TRIDC6BG016810 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G084400.1, TraesCS6B02G118100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb231170_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-30038, nbis-gene-33802 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12141, Zma_g14893 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG13.183 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g18510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.227 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23105 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11692 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14756 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.158 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006747 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7067 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15869 |
| Salicaceae | Populus euphratica | 3 | populus_peu21817, populus_peu21823, populus_peu30106 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132632648, gene-LOC132641098 |
| Solanaceae | Solanum chilense | 2 | SOLCI001453900, SOLCI001698100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014345, gene-LOC107018503 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1141 |
| Zosteraceae | Zostera marina | 1 | Zosma06g00350.v3.1 |