Basic Information
Locus ID:
Ag6G00316
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 9890321 | 9891876 | - | Ag6G00316 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 42,425.71 Da | 44.64 | 91.63 | -0.09 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23390.1 | Kelch repeat-containing F-box family protein. | 0 |
| RefSeq | XP_017231829.1 | PREDICTED: F-box/kelch-repeat protein At1g23390 [Daucus carota subsp. sativus] | 0 |
| Q9LDE3 | F-box/kelch-repeat protein At1g23390 OS=Arabidopsis thaliana OX=3702 GN=At1g23390 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161X5L7 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007072 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.21604 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.117994 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.416925 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.132117 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.188915 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.806881 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.6837 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.933371 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 24.684574 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.23081 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.828236 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.883512 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 23.835087 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 27.649815 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.86813 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.755383 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 23.554672 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.437365 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 15.926061 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 18.746853 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 24.713499 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.088083 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.796663 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.036474 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.780504 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 20.07316 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.090134 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.21887 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.938089 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 55.174778 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 22.39237 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 19.629482 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 67.785706 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 35.445278 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 107.962471 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 62.070797 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 39.428783 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 44.548267 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 27.708494 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 26.35207 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 21.529516 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.216229 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 13.807185 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.656763 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 25.744976 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.532217 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 29.839073 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 36.693775 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 29.34314 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 39.158726 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg5502, jg9481 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_18319, gene_3625 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013595 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g148540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42895, Sbi_jg45509 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11356 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35315, Sgl40674 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000380, gene:ENSEOMG00000013799 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0005040, CQ.Regalona.r1.6BG0005240 |
| Apiaceae | Apium graveolens | 1 | Ag6G00316 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G008530 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708205 |
| Asteraceae | Flaveria trinervia | 2 | Ftri3G10709, Ftri8G18066 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G23390.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007835m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g20830.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g038670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1383 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1469 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07710 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g03330, gene.Thate03g03340, gene.Thate03g03350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.575 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033001 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2895, BH02.2977, CH02.3552 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0030240, gene-QOZ80_1BG0080280 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0283480.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_054800 |
| Poaceae | Oryza coarctata | 3 | Oco02G018590, Oco03G009810, Oco04G010130 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g50840.1, LOC_Os02g26670.1, LOC_Os09g12150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G248400 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr03G014410 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G047200, Tel3E01G427100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG038040, gene_TRIDC3BG042790 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G253800.1.cds1, TraesCS3B02G285700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb155550_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-12678, nbis-gene-1316, nbis-gene-51875 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8494 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.415, evm.TU.LG12.1289 |
| Posidoniaceae | Posidonia oceanica | 10 | gene.Posoc04g05230, gene.Posoc04g05240, gene.Posoc04g05260 ... |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_15_RagTag.763, evm.TU.Scaffold_17_RagTag.218 ... |
| Rhizophoraceae | Carallia pectinifolia | 7 | nbisL1-mrna-23112, nbisL1-mrna-23113, nbisL1-mrna-23114 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11697, nbisL1-mrna-11698 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14750, nbisL1-mrna-14751 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000013l.47, add.evm.TU.utg000013l.49 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006540, Maker00006544 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19553, nbisL1-mrna-19554 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15876, nbisL1-mrna-15877 |
| Salicaceae | Populus euphratica | 1 | populus_peu21812 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641090 |
| Solanaceae | Solanum chilense | 1 | SOLCI001454400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019086 |
| Zosteraceae | Zostera marina | 1 | Zosma03g03480.v3.1 |