Basic Information
Locus ID:
Ag6G00196
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein BPS1, chloroplastic-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 5418569 | 5421973 | - | Ag6G00196 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 39,585.37 Da | 38.29 | 98.58 | -0.04 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46080.1 | 0 | |
| RefSeq | XP_017235342.1 | PREDICTED: protein BPS1, chloroplastic [Daucus carota subsp. sativus] | 0 |
| Q9LMM6 | Protein BPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BPS1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166FHP3 | Protein BPS1, chloroplastic-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008628 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 33.358795 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 31.260176 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 34.628044 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 35.156086 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 33.739388 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 37.131077 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 32.847187 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 36.023907 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 62.79324 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 66.429985 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 63.361057 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 55.485165 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 53.650124 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 48.846619 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 71.567688 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 62.08667 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 73.677887 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 65.752716 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 68.579529 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 70.204086 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 76.537407 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 62.016933 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 56.449837 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 62.955887 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 60.019745 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 88.009682 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 88.111961 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 66.869987 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 81.701187 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 73.269737 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 85.15921 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 79.384941 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 75.437012 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 53.770267 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 74.0783 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 58.772625 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 49.836655 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 50.937485 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 41.298092 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 45.877052 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 59.806896 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 81.124626 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 86.964195 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 82.584335 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 79.005241 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 68.635712 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 63.237492 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 50.877308 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 50.49395 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 46.463802 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg1944, jg26883, jg29383, jg29622 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022957 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004160 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4558, Sbi_jg49277 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5965 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000487 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11033, Sgl16440 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013774, gene:ENSEOMG00000035568 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0003280, CQ.Regalona.r1.2BG0025270 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30004870 |
| Apiaceae | Apium graveolens | 2 | Ag6G00196, Ag6G01574 |
| Arecaceae | Cocos nucifera | 3 | COCNU_08G007260, COCNU_10G004630, scaffold069565G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103712204, gene-LOC103715797, gene-LOC103717129 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2236.V1.1, AsparagusV1_08.273.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA24515 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G01550.1, AT2G46080.1, AT4G01360.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001526m.g.v1.0, Thhalv10008079m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g00770.v2.2, Sp4g28140.v2.2, Sp5g01900.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB01g001070.2N, BniB03g037000.2N, BniB04g043680.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0977 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1027 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno12g04760, gene.Cymno15g03870 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g04560, gene.Thate07g02910 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9512 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.821 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001448 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03564, Lb2G11148 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1597, BH01.1793, CH01.1885 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0113690, gene-QOZ80_2BG0166860 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_011929, gene-QYE76_012050 |
| Poaceae | Oryza coarctata | 1 | Oco20G007800 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g36950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G177600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502872 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G029480, Chr06G029490, Chr09G002680, Chr15G020730 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G317600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG027080, gene_TRIDC1BG033860 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G177400.1.cds1, TraesCS1B02G202800.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb043640_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34386 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15514 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2242, evm.TU.LG06.63, evm.TU.LG19.949 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc07g05090, gene.Posoc09g02260 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.458, evm.TU.Scaffold_9_RagTag.533 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10817, nbisL1-mrna-21654 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16294, nbisL1-mrna-6815 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10378, nbisL1-mrna-7345 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000003l.85, add.evm.TU.utg000006l.170 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00013553, Maker00017673 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17417, nbisL1-mrna-20794 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19616, nbisL1-mrna-7213 |
| Salicaceae | Populus euphratica | 2 | populus_peu27654, populus_peu31635 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132632686, gene-LOC132645547 |
| Solanaceae | Solanum chilense | 1 | SOLCI001073400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002449, gene-LOC107005440 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.15107_chr06_+, STRG.29010_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2209, TC09G2248 |
| Zosteraceae | Zostera marina | 3 | Zosma05g00560.v3.1, Zosma06g11140.v3.1, Zosma481g00040.v3.1 |