Basic Information
Locus ID:
Ag6G00193
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Mechanosensitive ion channel protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 5401926 | 5406979 | + | Ag6G00193 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 56,610.71 Da | 34.05 | 91.69 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00924 | Mechanosensitive ion channel | 313 | 513 | 2.1E-32 | IPR006685 |
| SUPERFAMILY | SSF50182 | Sm-like ribonucleoproteins | 355 | 420 | 8.5E-14 | IPR010920 |
| SUPERFAMILY | SSF82861 | Mechanosensitive channel protein MscS (YggB), transmembrane region | 266 | 354 | 2.48E-8 | IPR011014 |
| Gene3D | G3DSA:1.10.287.1260 | - | 265 | 369 | 3.2E-14 | - |
| Gene3D | G3DSA:2.30.30.60 | - | 371 | 419 | 6.6E-13 | IPR023408 |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00290.1 | Mechanosensitive ion channel protein. | 0 |
| RefSeq | XP_017231173.1 | PREDICTED: mechanosensitive ion channel protein 1, mitochondrial-like [Daucus carota subsp. sativus] | 0 |
| Q8VZL4 | Mechanosensitive ion channel protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166FHK6 | L-gulonolactone oxidase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008625 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.602762 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.725804 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.729085 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.789384 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.127032 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.230371 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.818835 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.548357 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.348455 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.067835 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.914436 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 33.887871 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.692493 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.385946 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.892578 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.037205 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 15.001685 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 21.672834 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 16.883087 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 24.006708 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.266098 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.351788 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 21.81921 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.180809 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.429771 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 25.314569 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.98336 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.312878 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 23.600618 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.938404 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.76689 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.203907 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.596721 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.960361 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.280531 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.634414 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.491084 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.169734 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.024485 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 15.00352 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.108715 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 44.314816 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 39.972389 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.69252 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 20.719831 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 38.090332 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.574497 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.915768 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 20.211378 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.001448 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg13722, jg1948, jg6682, jg6803 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1685 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022961 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004200 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4554, Sbi_jg49280 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5962 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000484 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11036, Sgl16444 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015365, gene:ENSEOMG00000033132 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0003240, CQ.Regalona.r1.2BG0025240 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30055880, pistato.v30242870 |
| Apiaceae | Apium graveolens | 1 | Ag6G00193 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G007680 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103717359, gene-LOC120107065 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G11052 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G00234.1, AT4G00290.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028609m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g00340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g042160.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0974 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1002, Cgl02G1024 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g07650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.831 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001441 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03559, Lb1G07413 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.3004, AH09.2026, BH07.2829, BH09.2185, CH07.2909 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0196560, gene-QOZ80_4AG0306570 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0186360.1, HORVU.MOREX.r3.7HG0715930.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_045752, gene-QYE76_045772 |
| Poaceae | Oryza coarctata | 4 | Oco03G018230, Oco04G018980, Oco07G013860, Oco08G013370 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g45690.1, LOC_Os04g48940.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G238700, gene-BS78_06G196200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0307294, Pt_Chr0503701, Pt_Chr0703612 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G023470, Chr23G005920, Chr26G013680 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G679400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG057290, gene_TRIDC2BG060130 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS2A02G395900.1, TraesCS2B02G414200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb073200_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22257, nbis-gene-22634 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16881, Zma_g20288 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.947, evm.TU.LG24.949 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g02210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.531 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21649 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-91 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7343 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.251 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017544 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1749 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19619 |
| Salicaceae | Populus euphratica | 1 | populus_peu27659 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632659 |
| Solanaceae | Solanum chilense | 1 | SOLCI005830600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002245, gene-LOC107002246 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1408 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2212 |
| Zosteraceae | Zostera marina | 1 | Zosma07g00380.v3.1 |