Basic Information
Locus ID:
Ag6G00192
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein RIC1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 5386833 | 5400610 | + | Ag6G00192 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 119,915.89 Da | 45.42 | 93.91 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07064 | RIC1 | 681 | 931 | 9.0E-66 | IPR009771 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 73 | 513 | 1.03E-18 | IPR036322 |
| SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 371 | 659 | 5.75E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 131 | 492 | 6.7E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 54 | 95 | 87.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 441 | 479 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 288 | 335 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 245 | 284 | 150.0 | IPR001680 |
| Coils | Coil | Coil | 766 | 786 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61480.2 | - | 0 |
| RefSeq | XP_017234707.1 | PREDICTED: RAB6A-GEF complex partner protein 1-like [Daucus carota subsp. sativus] | 0 |
| Q9V3C5 | Guanine nucleotide exchange factor subunit Rich OS=Drosophila melanogaster OX=7227 GN=Rich PE=1 SV=1 | 0 | |
| TrEMBL | A0A166E526 | RIC1 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006941 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.081377 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.580055 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.745861 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.807872 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.881621 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.202215 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.788431 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.23223 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 10.00066 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.786404 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.618577 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.56555 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.569655 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.55337 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.4838 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.168576 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.238261 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.867135 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.763246 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.410335 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.843244 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.450039 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.413409 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.16725 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.093956 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.804628 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.548587 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.032172 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.482994 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.325957 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.466846 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.60098 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.572993 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.274069 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.868932 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.479314 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.121555 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.308968 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.188921 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.812978 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.960557 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.977142 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.509674 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.245314 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.539439 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.664369 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.329281 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.790991 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.238281 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.276389 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29377 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1686 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022967 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004240 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4549, Sbi_jg49444 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5955 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000479 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11039, Sgl16448 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014331, gene:ENSEOMG00000033206 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0003190, CQ.Regalona.r1.2BG0025190 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30004790, pistato.v30004810 |
| Apiaceae | Apium graveolens | 2 | Ag6G00192, Ag6G01580 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G000160 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703979 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2428.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G08641 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G61480.1, AT5G28350.1, AT5G28442.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005756m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g01920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g053170.2N, BniB08g075600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0964 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0995 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g09390 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0874s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g20190 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2813 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.836 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001464 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G38296, Lb1G03554, Lb7G32894, Lb7G32896 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3717, BH07.3539, CH07.3611 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0148340, gene-QOZ80_2BG0203710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0622040.2 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_025884, gene-QYE76_026150 |
| Poaceae | Oryza coarctata | 2 | Oco03G023700, Oco04G024260 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g54500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G299800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202982 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr09G018150, Chr0G032560, Chr13G002350, Chr13G002370 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G614700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG051920, gene_TRIDC6BG060530 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G344300.1, TraesCS6B02G377200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb192800_P001, Zm00001eb257250_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39975 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17298 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2244, evm.TU.LG06.59 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g20790 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.238, evm.TU.Scaffold_9_RagTag.527 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21646 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10394 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-10549, nbisL1-mrna-10550, nbisL1-mrna-7341 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.252 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017765 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1751, nbisL1-mrna-9178 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-19621, nbisL1-mrna-24483, nbisL1-mrna-7056 |
| Salicaceae | Populus euphratica | 2 | populus_peu27663, populus_peu31640 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645553 |
| Solanaceae | Solanum chilense | 1 | SOLCI001074000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002493 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.19952_chr11_-, gene_1413 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2222 |
| Zosteraceae | Zostera marina | 1 | Zosma04g06160.v3.1 |