halophFGD

Basic Information

Locus ID: Ag6G00182

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: U-box domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	5282475	5287507	+	Ag6G00182

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.03	89,679.72 Da	56.17	92.90	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01989	STK_N	16	168	5.50401E-46	-
CDD	cd16655	RING-Ubox_WDSUB1_like	733	774	2.32976E-22	-
Pfam	PF04564	U-box domain	729	797	2.3E-17	IPR003613
Pfam	PF00069	Protein kinase domain	453	698	1.1E-34	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	428	710	3.1E-60	IPR011009
SUPERFAMILY	SSF52402	Adenine nucleotide alpha hydrolases-like	18	133	2.68E-5	-
SUPERFAMILY	SSF57850	RING/U-box	720	797	1.24E-22	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	728	798	2.7E-27	IPR013083
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	515	727	1.5E-46	-
Gene3D	G3DSA:3.40.50.620	HUPs	4	133	4.8E-7	IPR014729
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	427	514	2.4E-20	-
SMART	SM00504	Ubox_2	732	795	1.2E-25	IPR003613
SMART	SM00220	serkin_6	448	707	6.8E-24	IPR000719
ProSiteProfiles	PS51698	U-box domain profile.	728	799	31.563223	IPR003613
ProSiteProfiles	PS50011	Protein kinase domain profile.	448	729	30.350658	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	560	572	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	454	475	-	IPR017441
Coils	Coil	Coil	322	419	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation) GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004842 (ubiquitin-protein transferase activity) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G45910.1	U-box domain-containing protein kinase family protein.
RefSeq	XP_017235870.1	PREDICTED: U-box domain-containing protein 33-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q8GUH1	U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2
TrEMBL	A0A6L5B7Q1	RING-type E3 ubiquitin transferase OS=Apium graveolens OX=4045 GN=AG4045_030741 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	5.702693	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	7.632806	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	7.694952	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	7.508766	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	6.799812	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	8.458553	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	8.950434	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	8.207312	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	50.563129	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	50.716286	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	49.524361	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	37.086346	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	60.473324	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	40.076035	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	28.238979	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	15.214418	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	7.098849	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	10.679173	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	18.797903	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	10.84156	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	9.349374	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.104108	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.243828	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.530227	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.791476	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	5.303335	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	4.991489	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	9.731006	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	10.302024	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.692067		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	10.91569		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	9.016592		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.192152		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.841923		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.250941		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	12.435906		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	15.059952		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	14.6741		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	38.137211	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	60.741165	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	50.378914	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	20.27062	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	14.60829	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	4.644967	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	4.234393	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	7.470349	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	7.567214	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	7.279593	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	4.839046	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	6.2114	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg1927, jg2286, jg29359
Aizoaceae	Mesembryanthemum crystallinum	4	gene_16140, gene_1698, gene_1699, gene_1700
Amaranthaceae	Atriplex hortensis	4	Ah022999, Ah023000, Ah023003, Ah026927
Amaranthaceae	Beta vulgaris	7	BVRB_1g004560, BVRB_1g004570, BVRB_1g004590, BVRB_1g004600 ... BVRB_1g004610, BVRB_1g004620, BVRB_3g055100
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg38402, Sbi_jg4507, Sbi_jg4511, Sbi_jg4512, Sbi_jg49407 ... Sbi_jg49409, Sbi_jg49410, Sbi_jg6509
Amaranthaceae	Salicornia europaea	4	Seu_jg15408, Seu_jg5923, Seu_jg5925, Seu_jg5926
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00000444, GOSA_00000445, GOSA_00000446, GOSA_00000447 ... GOSA_00006500
Amaranthaceae	Suaeda glauca	14	Sgl01957, Sgl07113, Sgl11066, Sgl11067, Sgl11069, Sgl11070 ... Sgl11071, Sgl11072, Sgl16474, Sgl16475, Sgl16481, Sgl16483, Sgl16484, Sgl16485
Amaranthaceae	Chenopodium album	14	gene:ENSEOMG00000004247, gene:ENSEOMG00000013828 ... gene:ENSEOMG00000015346, gene:ENSEOMG00000025320, gene:ENSEOMG00000031798, gene:ENSEOMG00000032904, gene:ENSEOMG00000034205, gene:ENSEOMG00000034655, gene:ENSEOMG00000035157, gene:ENSEOMG00000036136, gene:ENSEOMG00000036721, gene:ENSEOMG00000047518, gene:ENSEOMG00000048036, gene:ENSEOMG00000050091
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.1AG0002930, CQ.Regalona.r1.2BG0024870 ... CQ.Regalona.r1.2BG0024880, CQ.Regalona.r1.2BG0024890, CQ.Regalona.r1.3AG0003050, CQ.Regalona.r1.3BG0003310, CQ.Regalona.r1.4AG0016310, CQ.Regalona.r1.6AG0020690, CQ.Regalona.r1.6BG0021750
Anacardiaceae	Pistacia vera	3	pistato.v30004550, pistato.v30004570, pistato.v30182970
Apiaceae	Apium graveolens	4	Ag2G02024, Ag6G00182, Ag6G01591, AgUnG01431
Arecaceae	Cocos nucifera	3	COCNU_07G011370, COCNU_08G010440, COCNU_09G007890
Arecaceae	Phoenix dactylifera	4	gene-LOC103698606, gene-LOC103705579, gene-LOC103717427 ... gene-LOC120103911
Asparagaceae	Asparagus officinalis	4	AsparagusV1_07.2106.V1.1, AsparagusV1_Unassigned.220.V1.1 ... AsparagusV1_Unassigned.221.V1.1, AsparagusV1_Unassigned.222.V1.1
Asteraceae	Flaveria trinervia	2	Ftri18G00277, Ftri7G01165
Brassicaceae	Arabidopsis thaliana	5	AT2G45910.1, AT2G45920.1, AT3G49060.1, AT3G61390.2 ... AT3G61410.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10001310m.g.v1.0, Thhalv10006399m.g.v1.0 ... Thhalv10006400m.g.v1.0, Thhalv10010130m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp1g00650.v2.2, Sp1g00660.v2.2, Sp4g27980.v2.2 ... Sp4g27990.v2.2, Sp5g01990.v2.2, Sp5g02000.v2.2, Sp5g02010.v2.2, Sp5g13010.v2.2
Brassicaceae	Brassica nigra	12	BniB01g001180.2N, BniB01g001190.2N, BniB03g061970.2N ... BniB06g004290.2N, BniB06g004300.2N, BniB06g009850.2N, BniB06g053220.2N, BniB06g062030.2N, BniB06g062040.2N, BniB08g062310.2N, BniB08g075520.2N, BniB08g075530.2N
Casuarinaceae	Casuarina equisetifolia	20	Ceq01G0562, Ceq01G0564, Ceq01G0565, Ceq01G0569, Ceq05G0386 ... Ceq05G0387, Ceq05G0388, Ceq05G0390, Ceq05G0393, Ceq05G0395, Ceq05G0399, Ceq05G0401, Ceq05G0403, Ceq05G0404, Ceq05G0407, Ceq05G1208, Ceq05G1209, Ceq05G1211, Ceq05G1213, Ceq09G1454
Casuarinaceae	Casuarina glauca	19	Cgl01G0644, Cgl01G0645, Cgl01G0646, Cgl01G0647, Cgl01G0650 ... Cgl04G0110, Cgl05G0088, Cgl05G0089, Cgl05G0401, Cgl05G0402, Cgl05G0403, Cgl05G0405, Cgl05G0406, Cgl05G0409, Cgl05G1219, Cgl05G1220, Cgl05G1221, Cgl05G1222, Cgl09G1547
Cymodoceaceae	Cymodocea nodosa	8	gene.Cymno01g00930, gene.Cymno02g09510, gene.Cymno03g06020 ... gene.Cymno06g13400, gene.Cymno10g02580, gene.Cymno10g02590, gene.Cymno10g02600, gene.Cymno14g01100
Hydrocharitaceae	Thalassia testudinum	9	gene.Thate01g06730, gene.Thate02g28560, gene.Thate03g11000 ... gene.Thate03g15190, gene.Thate07g05560, gene.Thate08g01700, gene.Thate08g01710, gene.Thate08g11100, gene.Thate08g22530
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-2802, nbisL1-mrna-2804
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2746, evm.TU.LG04.861
Plantaginaceae	Plantago ovata	4	Pov_00016715, Pov_00031928, Pov_00031933, Pov_00040981
Plumbaginaceae	Limonium bicolor	13	Lb0G38372, Lb0G38373, Lb1G03520, Lb1G03521, Lb1G03523 ... Lb1G03524, Lb1G03963, Lb1G03964, Lb1G04003, Lb1G05483, Lb2G11070, Lb2G11073, Lb2G11079
Poaceae	Echinochloa crus-galli	22	AH01.3004, AH01.3006, AH03.1123, AH03.1124, AH07.2917 ... AH07.2921, BH01.3336, BH01.3337, BH01.3341, BH03.1287, BH03.1288, BH07.2740, BH07.2741, BH07.2742, BH07.2743, CH01.3583, CH01.3586, CH03.1387, CH03.1443, CH03.1447, CH07.2814, CH07.2815
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_2AG0115760, gene-QOZ80_2AG0115780 ... gene-QOZ80_2AG0140160, gene-QOZ80_2BG0169630, gene-QOZ80_2BG0169650, gene-QOZ80_2BG0195820, gene-QOZ80_2BG0195830, gene-QOZ80_4AG0307630, gene-QOZ80_4BG0338650, gene-QOZ80_6AG0525150, gene-QOZ80_6AG0525170
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0055700.1, HORVU.MOREX.r3.1HG0055720.1 ... HORVU.MOREX.r3.1HG0055740.1, HORVU.MOREX.r3.5HG0495240.1, HORVU.MOREX.r3.5HG0495250.1, HORVU.MOREX.r3.6HG0602140.1
Poaceae	Lolium multiflorum	14	gene-QYE76_012484, gene-QYE76_012486, gene-QYE76_012488 ... gene-QYE76_029937, gene-QYE76_029938, gene-QYE76_038239, gene-QYE76_038240, gene-QYE76_038241, gene-QYE76_038251, gene-QYE76_038252, gene-QYE76_049683, gene-QYE76_049685, gene-QYE76_049694, gene-QYE76_071986
Poaceae	Oryza coarctata	8	Oco03G017560, Oco04G018310, Oco17G012270, Oco19G009530 ... Oco19G009550, Oco19G009700, Oco20G009450, Oco20G009470
Poaceae	Oryza sativa	6	LOC_Os09g39620.1, LOC_Os09g39640.1, LOC_Os10g40060.1 ... LOC_Os10g40100.1, LOC_Os10g40120.1, LOC_Os10g40490.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G294000, gene-BS78_01G294200 ... gene-BS78_02G134200, gene-BS78_02G134600
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0205954, Pt_Chr0403833, Pt_Chr0403883, Pt_Chr0405242 ... Pt_Chr0503115, Pt_Chr0503117, Pt_Chr0503150, Pt_Chr0503153, Pt_Chr0503154, Pt_Ctg00317, Pt_Ctg00318
Poaceae	Sporobolus alterniflorus	13	Chr06G005580, Chr06G028270, Chr09G004400, Chr09G004420 ... Chr10G005450, Chr10G005460, Chr11G013750, Chr13G020510, Chr13G020530, Chr15G007210, Chr15G018730, Chr15G019520, Chr21G008490
Poaceae	Thinopyrum elongatum	10	Tel1E01G357300, Tel1E01G357600, Tel4E01G012800 ... Tel4E01G012900, Tel4E01G573700, Tel4E01G574000, Tel4E01G574100, Tel5E01G471100, Tel5E01G471200, Tel6E01G461500
Poaceae	Triticum dicoccoides	16	gene_TRIDC1AG031360, gene_TRIDC1AG031380 ... gene_TRIDC1AG031400, gene_TRIDC1BG036730, gene_TRIDC1BG036820, gene_TRIDC1BG036860, gene_TRIDC4AG047370, gene_TRIDC4BG001240, gene_TRIDC5AG044080, gene_TRIDC5BG048050, gene_TRIDC5BG048060, gene_TRIDC6AG037910, gene_TRIDC6AG050680, gene_TRIDC6BG003080, gene_TRIDC6BG044860, gene_TRIDC6BG059270
Poaceae	Triticum aestivum	23	TraesCS1A02G207800.1, TraesCS1A02G207900.1 ... TraesCS1A02G208100.1, TraesCS1B02G221500.1, TraesCS1B02G221900.1, TraesCS1B02G222200.1, TraesCS1D02G211100.1, TraesCS1D02G211200.1, TraesCS1D02G211400.1, TraesCS4B02G350300.1, TraesCS4D02G003800.1, TraesCS5A02G294600.1, TraesCS5A02G294700.1, TraesCS5B02G293900.1, TraesCS5B02G294000.1, TraesCS5D02G302000.1, TraesCS5D02G302100.1, TraesCS6A02G245500.1, TraesCS6A02G338300.1, TraesCS6B02G278900.1, TraesCS6B02G368900.1, TraesCS6D02G227900.1, TraesCS6D02G319000.1
Poaceae	Zea mays	3	Zm00001eb022810_P002, Zm00001eb022920_P001 ... Zm00001eb186860_P001
Poaceae	Zoysia japonica	6	nbis-gene-22343, nbis-gene-22344, nbis-gene-31811 ... nbis-gene-47009, nbis-gene-47010, nbis-gene-53375
Poaceae	Zoysia macrostachya	7	Zma_g15632, Zma_g15633, Zma_g16830, Zma_g20222, Zma_g29844 ... Zma_g31405, Zma_g32024
Portulacaceae	Portulaca oleracea	11	evm.TU.LG04.2255, evm.TU.LG04.2274, evm.TU.LG04.2275 ... evm.TU.LG06.33, evm.TU.LG06.34, evm.TU.LG11.1642, evm.TU.LG19.924, evm.TU.LG19.925, evm.TU.LG19.927, evm.TU.LG24.927, evm.TU.LG24.929
Posidoniaceae	Posidonia oceanica	11	gene.Posoc02g13810, gene.Posoc02g13850, gene.Posoc02g13880 ... gene.Posoc02g13900, gene.Posoc03g01950, gene.Posoc03g01960, gene.Posoc06g05730, gene.Posoc06g05760, gene.Posoc06g05770, gene.Posoc06g05780, gene.Posoc06g05800
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_11_RagTag.1408, evm.TU.Scaffold_9_RagTag.504
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12699, nbisL1-mrna-21632
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-19077, nbisL1-mrna-1920, nbisL1-mrna-5533
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-22421, nbisL1-mrna-7330
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.262, evm.TU.utg000010l.385
Rhizophoraceae	Kandelia obovata	2	Maker00008809, Maker00017690
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1088, nbisL1-mrna-1761
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-19631, nbisL1-mrna-20577
Salicaceae	Populus euphratica	6	populus_peu27691, populus_peu27692, populus_peu27693 ... populus_peu30661, populus_peu31660, populus_peu31661
Solanaceae	Lycium barbarum	2	gene-LOC132631932, gene-LOC132645572
Solanaceae	Solanum chilense	2	SOLCI001350600, SOLCI004625900
Solanaceae	Solanum pennellii	2	gene-LOC107007977, gene-LOC107015310
Tamaricaceae	Reaumuria soongarica	6	MSTRG.13959_chr08_+, MSTRG.19974_chr11_+, gene_1424 ... MSTRG.19976_chr11_-, gene_15233, gene_4158
Tamaricaceae	Tamarix chinensis	6	TC03G2242, TC03G2251, TC03G2252, TC06G2369, TC09G2217 ... TC09G2218
Zosteraceae	Zostera marina	3	Zosma03g26770.v3.1, Zosma03g26780.v3.1, Zosma05g28470.v3.1