Basic Information
Locus ID:
Ag6G00181
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein pleiotropic regulatory locus 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 5255411 | 5261741 | - | Ag6G00181 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.24 | 53,035.67 Da | 45.12 | 72.98 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 159 | 454 | 3.48076E-95 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 158 | 195 | 4.5E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 242 | 279 | 6.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 286 | 321 | 1.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 200 | 237 | 1.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 152 | 454 | 2.44E-76 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 141 | 477 | 1.1E-118 | IPR015943 |
| SMART | SM00320 | WD40_4 | 365 | 404 | 0.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 416 | 454 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 282 | 321 | 7.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 240 | 279 | 5.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 195 | 9.3E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 324 | 362 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 198 | 237 | 1.7E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 205 | 246 | 13.181907 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 289 | 323 | 11.154684 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 289 | 330 | 14.819399 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 163 | 204 | 16.122709 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 247 | 288 | 14.451798 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 163 | 196 | 12.657402 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 247 | 282 | 11.391954 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 205 | 242 | 9.783781 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 308 | 322 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 266 | 280 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 182 | 196 | 1.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 308 | 322 | 1.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 266 | 280 | 1.3E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 477 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15900.1 | pleiotropic regulatory locus 1. Mutations confer hypersensitivity to glucose and sucrose and augments sensitivity to cytokinin, ethylene, ABA and auxin. Encodes a nuclear WD40 protein that is imported into the nucleus. Essential for plant innate immunity. Interacts with MOS4 and AtCDC5. It is also predicted to have two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase, and may affect the stability of AKIN10. | 0 |
| RefSeq | XP_017231327.1 | PREDICTED: protein pleiotropic regulatory locus 1-like [Daucus carota subsp. sativus] | 0 |
| Q42384 | Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana OX=3702 GN=PRL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161XKH3 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008606 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 34.309952 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 24.865131 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 32.321758 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 32.608845 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 35.048508 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 35.433598 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 29.401794 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 26.243797 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 44.937279 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 50.283245 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.259903 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 52.087128 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 48.701389 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 44.003326 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 17.082493 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 19.922655 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 24.164978 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.241997 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 20.355448 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 18.927923 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 21.898388 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 28.262966 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 29.792267 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 24.98247 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 28.75396 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 25.5254 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.595392 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 21.899908 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.176283 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 25.77532 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 25.754328 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 21.879475 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.536863 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 26.455004 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 25.322779 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 20.871639 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.325758 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 16.858089 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 29.016279 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.85283 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.736923 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.986375 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 18.810947 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.110149 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.777021 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 19.008089 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 25.189547 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 42.260235 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 41.417385 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 35.034538 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1912 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18792 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah002099, Ah033823 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g164380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg35628, Sbi_jg974 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3756 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023450 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl68926 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005707, gene:ENSEOMG00000037008 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0014140, CQ.Regalona.r1.7BG0015800 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30234300 |
| Apiaceae | Apium graveolens | 2 | Ag6G00181, Ag7G01606 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G010210 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698165, gene-LOC103703613 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.954.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G31554 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G16650.1, AT4G15900.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022263m.g.v1.0, Thhalv10025068m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g14940.v2.2, Sp7g14350.v2.2, SpUn1161_0010.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g073630.2N, BniB05g020390.2N, BniB05g055790.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1130 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1227 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g17390 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.2647s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g04110 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3028, nbisL1-mrna-5079 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1295 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00028059, Pov_00028060, Pov_00031986 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33999 |
| Poaceae | Echinochloa crus-galli | 4 | AH09.193, BH01.2015, CH01.2103, Contig328.73 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0326650, gene-QOZ80_4BG0358680 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0253650.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_006901, gene-QYE76_052157 |
| Poaceae | Oryza coarctata | 4 | Oco05G013080, Oco06G013390, Oco17G009500, Oco18G009510 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g21990.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G027300, gene-BS78_K285100 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0604039, Pt_Chr0605301, Pt_Chr0700506, Pt_Chr0700560 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G031990, Chr05G009980, Chr10G020650, Chr11G001990 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G306400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG024390, gene_TRIDC3BG028110 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G175600.2, TraesCS3B02G205300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb051300_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32015, nbis-gene-40598 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20885, Zma_g33273 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.493, evm.TU.LG21.187 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g32250 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.588, evm.TU.Scaffold_6_RagTag.595 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16093 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15888 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-490 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.344 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007774 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12195, nbisL1-mrna-13734 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3646 |
| Salicaceae | Populus euphratica | 3 | populus_peu08061, populus_peu22219, populus_peu22229 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132612705, gene-LOC132633620, gene-LOC132633622 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI004130400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008122, gene-LOC114073927 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2951 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1074 |
| Zosteraceae | Zostera marina | 1 | Zosma04g25650.v3.1 |