Basic Information
Locus ID:
Ag6G00180
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 5249015 | 5250355 | - | Ag6G00180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 39,250.07 Da | 39.99 | 87.14 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 59 | 329 | 7.4E-45 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 29 | 329 | 4.72E-66 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 130 | 346 | 4.4E-52 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 26 | 129 | 6.5E-20 | - |
| SMART | SM00220 | serkin_6 | 55 | 336 | 2.4E-26 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 55 | 343 | 34.930073 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 175 | 187 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10390.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017232732.1 | PREDICTED: probable receptor-like protein kinase At4g10390 [Daucus carota subsp. sativus] | 0 |
| A2XW02 | Salt tolerance receptor-like cytoplasmic kinase 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16820 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166FGS6 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008605 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.331436 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.411178 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.848392 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.035276 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.630582 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.954701 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.698995 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.311436 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.220543 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.071169 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.377724 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.912813 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.343882 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.430408 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.511681 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.332709 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.40707 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.150606 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.544204 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.785034 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.67786 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.882166 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.003331 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.073576 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.056623 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.954999 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.641627 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.224184 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.23438 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.327901 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.678293 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.91032 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.56418 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.673869 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.99422 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.5221 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.675973 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.181223 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.318342 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg22517, jg37420, jg5028 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15105 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004457 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g107980 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15656, Sbi_jg56467 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13699 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001749 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52545, Sgl57822 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007180, gene:ENSEOMG00000022729 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0001080, CQ.Regalona.r1.5BG0001190 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30132760 |
| Apiaceae | Apium graveolens | 2 | Ag6G00180, Ag6G01602 |
| Arecaceae | Cocos nucifera | 5 | COCNU_08G007490, COCNU_09G002580, COCNU_10G004640 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103708477, gene-LOC103712205, gene-LOC103715817 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.2229.V1.1, AsparagusV1_04.2231.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G18555 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G33260.1, AT4G10390.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008055m.g.v1.0, Thhalv10028779m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g28710.v2.2, Sp6g07040.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g050080.2N, BniB05g058540.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0699, Ceq09G1337 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0788, Cgl09G1426 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g07740, gene.Cymno03g07380, gene.Cymno12g04500 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g25120, gene.Thate05g08180, gene.Thate07g03280 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1652 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003097, Pov_00041788 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G11992, Lb2G12002, Lb2G14258 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.1593, AH07.2812, BH01.1791, BH07.2624, CH01.1881 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_2AG0113770, gene-QOZ80_2AG0139190 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.1HG0049480.1, HORVU.MOREX.r3.6HG0599320.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_012068, gene-QYE76_024040, gene-QYE76_045269 ... |
| Poaceae | Oryza coarctata | 7 | Oco04G017440, Oco05G000720, Oco06G000720, Oco07G011880 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os02g43290.1, LOC_Os03g02190.1, LOC_Os04g45730.1 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G177000, gene-BS78_01G508700 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0101485, Pt_Chr0201622, Pt_Chr0207509, Pt_Chr0502861 |
| Poaceae | Sporobolus alterniflorus | 12 | Chr06G006290, Chr06G029460, Chr09G002710, Chr09G024660 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G317000, Tel2E01G667600, Tel4E01G645500 ... |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC1AG027030, gene_TRIDC1BG033900 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS1A02G177000.1, TraesCS1B02G203200.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb043610_P001, Zm00001eb075270_P001 ... |
| Poaceae | Zoysia japonica | 6 | nbis-gene-22435, nbis-gene-3174, nbis-gene-34390 ... |
| Poaceae | Zoysia macrostachya | 7 | Zma_g12758, Zma_g14005, Zma_g15516, Zma_g16769, Zma_g20149 ... |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2930, evm.TU.LG10.578, evm.TU.LG16.684 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g17580, gene.Posoc09g03480 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22251 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000022l.270, add.evm.TU.utg000022l.271 |
| Salicaceae | Populus euphratica | 2 | populus_peu00175, populus_peu17282 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132618296, gene-LOC132636400, gene-LOC132638572 |
| Solanaceae | Solanum chilense | 1 | SOLCI000984800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107006860, gene-LOC107024419 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.23614_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G4640 |
| Zosteraceae | Zostera marina | 1 | Zosma01g04630.v3.1 |