Basic Information
Locus ID:
Ag6G00179
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 5240816 | 5243839 | - | Ag6G00179 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 46,485.13 Da | 44.16 | 94.90 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18052 | Rx N-terminal domain | 292 | 348 | 5.6E-7 | IPR041118 |
| Pfam | PF03000 | NPH3 family | 116 | 225 | 9.6E-8 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 5 | 88 | 8.1E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 6 | 88 | 1.57E-11 | IPR011333 |
| Gene3D | G3DSA:1.20.5.4130 | - | 277 | 377 | 5.4E-6 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 2 | 128 | 1.4E-9 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 171 | 252 | 15.187819 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 7 | 72 | 10.530184 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49900.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_017219030.1 | PREDICTED: BTB/POZ domain-containing protein At3g49900 [Daucus carota subsp. sativus] | 0 |
| Q9M2W8 | BTB/POZ domain-containing protein At3g49900 OS=Arabidopsis thaliana OX=3702 GN=At3g49900 PE=3 SV=1 | 0 | |
| TrEMBL | A0A161X881 | NPH3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025798 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.029293 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.259878 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.065764 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.915002 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.235561 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.037281 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19637, jg30719 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23999 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027532 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g128170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13170, Sbi_jg52672 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9179 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010108 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34596, Sgl40012 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000003441 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0026280, CQ.Regalona.r1.6BG0027700 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30205080 |
| Apiaceae | Apium graveolens | 2 | Ag5G00336, Ag6G00179 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G003850 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705308 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1230.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G00160 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G49900.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010291m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g12210.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g047690.2N, BniB08g063800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1430 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1431 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g01750 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g32310, gene.Thate08g15370 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2564 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023792 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3543, BH03.3760, CH03.3974 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0574990, gene-QOZ80_7BG0606350 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0129660.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_039982, gene-QYE76_040019 |
| Poaceae | Oryza coarctata | 2 | Oco13G011400, Oco14G012150 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g39850.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G333800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304676 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G020770, Chr19G003200, Chr24G011450, Chr27G014020 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G358200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG024730, gene_TRIDC2BG028320 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G192800.1, TraesCS2B02G213700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb326040_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32813, nbis-gene-536 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5465, Zma_g6747 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.80, evm.TU.LG25.1252 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g06770, gene.Posoc02g22900, gene.Posoc03g25820 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1785 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17370 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12311 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11980 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1086 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008074 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15444 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3298 |
| Salicaceae | Populus euphratica | 2 | populus_peu29848, populus_peu29854 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623408 |
| Solanaceae | Solanum chilense | 1 | SOLCI004236400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009061 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4482_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1923 |
| Zosteraceae | Zostera marina | 1 | Zosma04g04020.v3.1 |