Basic Information
Locus ID:
Ag6G00177
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
macromolecule glycosylation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 5231980 | 5236761 | + | Ag6G00177 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 115,861.27 Da | 46.59 | 81.22 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04019 | C2C_MCTP_PRT_plant | 441 | 591 | 7.74976E-82 | - |
| CDD | cd04022 | C2A_MCTP_PRT_plant | 5 | 131 | 2.98318E-59 | - |
| CDD | cd08378 | C2B_MCTP_PRT_plant | 278 | 402 | 1.92721E-62 | - |
| CDD | cd08379 | C2D_MCTP_PRT_plant | 603 | 729 | 1.70955E-62 | - |
| Pfam | PF08372 | Plant phosphoribosyltransferase C-terminal | 857 | 1012 | 4.0E-79 | IPR013583 |
| Pfam | PF00168 | C2 domain | 5 | 93 | 8.9E-17 | IPR000008 |
| Pfam | PF00168 | C2 domain | 602 | 712 | 2.0E-22 | IPR000008 |
| Pfam | PF00168 | C2 domain | 440 | 546 | 1.4E-16 | IPR000008 |
| Pfam | PF00168 | C2 domain | 279 | 370 | 1.6E-19 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 602 | 747 | 1.3E-26 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 5 | 140 | 4.09E-24 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 440 | 593 | 1.57E-28 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 279 | 418 | 1.57E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 587 | 735 | 1.5E-24 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 3 | 171 | 3.9E-23 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 422 | 570 | 1.1E-19 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 261 | 400 | 3.2E-28 | IPR035892 |
| SMART | SM00239 | C2_3c | 5 | 106 | 8.3E-11 | IPR000008 |
| SMART | SM00239 | C2_3c | 441 | 539 | 9.7E-11 | IPR000008 |
| SMART | SM00239 | C2_3c | 603 | 709 | 2.5E-14 | IPR000008 |
| SMART | SM00239 | C2_3c | 278 | 374 | 1.9E-14 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 585 | 710 | 16.351612 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 1 | 108 | 16.500748 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 423 | 544 | 15.194035 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 260 | 380 | 18.04892 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 209 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11610.2 | - | 0 |
| RefSeq | XP_017235449.1 | PREDICTED: protein QUIRKY-like [Daucus carota subsp. sativus] | 0 |
| Q84TJ7 | Multiple C2 domain and transmembrane region protein 7 OS=Arabidopsis thaliana OX=3702 GN=MCTP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166FGR0 | FT-interacting protein 1-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008603 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.99257 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.054202 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.362015 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 16.63586 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 15.504431 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.308542 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.561047 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.713986 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 48.666611 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 47.048569 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 45.709972 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 35.835262 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 36.546387 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 33.147156 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.480531 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.09429 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.539443 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 35.270355 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 21.853811 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 56.264332 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 54.042767 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.4922 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.906837 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.996669 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.178009 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.35301 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.180477 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.272642 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.857189 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 39.465622 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 38.167931 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 32.873596 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 86.047646 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 36.587387 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 78.871254 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 57.414715 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 49.373192 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 54.773579 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 24.651525 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 38.68071 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 26.789259 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 77.399788 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 64.146362 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.582108 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.703421 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 59.861412 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.616304 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.563023 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.774211 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.19011 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology