Basic Information
Locus ID:
Ag6G00145
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
SET domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 4761008 | 4768848 | - | Ag6G00145 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.60 | 63,525.88 Da | 46.40 | 87.15 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10527 | SET_LSMT | 20 | 328 | 1.46643E-47 | - |
| Pfam | PF00856 | SET domain | 36 | 314 | 5.2E-8 | IPR001214 |
| SUPERFAMILY | SSF82199 | SET domain | 8 | 332 | 1.14E-51 | - |
| Gene3D | G3DSA:3.90.1410.10 | set domain protein methyltransferase, domain 1 | 5 | 328 | 3.2E-57 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 231 | - | - |
| Coils | Coil | Coil | 222 | 242 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01920.2 | SET domain-containing protein. | 0 |
| RefSeq | XP_017233813.1 | PREDICTED: uncharacterized protein LOC108207896 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166FG65 | SET domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008582 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.590715 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.782784 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.938198 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.402303 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.367748 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.473565 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.424459 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.768591 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.824646 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.145679 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 7.377346 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.507255 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.386001 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.504703 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.512952 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.576445 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.624882 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.732363 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.318366 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.946921 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.909086 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.570621 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.419046 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.205153 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.44947 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.229665 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.739923 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.511265 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.424067 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.866479 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.043416 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.566367 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.807412 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.693575 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.63149 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.021005 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.141731 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.685263 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.959868 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.243232 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.451433 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.978098 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.748181 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.401828 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.237211 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.464155 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.299607 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.016541 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.589068 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.643099 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29302 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23271 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023096 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg49319 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg5826, Seu_jg6463 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000357 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11184, Sgl16583 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016397, gene:ENSEOMG00000035809 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0005520, CQ.Regalona.r1.2BG0024110 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30003380 |
| Apiaceae | Apium graveolens | 1 | Ag6G00145 |
| Arecaceae | Cocos nucifera | 2 | contig68481346G000010, scaffold051111G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721376 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1729.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G00072 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G01920.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007294m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g00380.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g000800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0643 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0657 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g01890 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0099s00013.v1.0, Dusal.0154s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g11620 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.953 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032096 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03396 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.468, BH06.145, CH06.138 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0506840, gene-QOZ80_6BG0458580 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0642740.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027560 |
| Poaceae | Oryza coarctata | 2 | Oco11G001200, Oco12G001110 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g03676.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G019300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0401909, Pt_Chr0401930 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G024110 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G124600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG063800, gene_TRIDC7AG006070 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G432200.1, TraesCS7D02G052800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb269430_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40277, nbis-gene-40278 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29020 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.2357 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g07300 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.326 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10904 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3405 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10481 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.536 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013422 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9233 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6980 |
| Salicaceae | Populus euphratica | 2 | populus_peu27763, populus_peu27764 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645650 |
| Solanaceae | Solanum chilense | 1 | SOLCI002558400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008205 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1463 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2499 |
| Zosteraceae | Zostera marina | 1 | Zosma05g31960.v3.1 |