halophFGD

Basic Information

Locus ID: Ag6G00115

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: WD domain, G-beta repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	3767818	3776807	-	Ag6G00115

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.21	129,415.45 Da	43.99	75.35	-0.52

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	1022	1054	0.038	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	848	877	0.19	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	933	970	0.012	IPR001680
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	409	672	8.7E-15	IPR011009
SUPERFAMILY	SSF50978	WD40 repeat-like	850	1159	1.68E-48	IPR036322
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	407	670	4.6E-21	-
Gene3D	G3DSA:2.130.10.10	-	822	1163	5.0E-122	IPR015943
SMART	SM00320	WD40_4	1113	1161	100.0	IPR001680
SMART	SM00320	WD40_4	930	970	3.4E-6	IPR001680
SMART	SM00320	WD40_4	973	1012	0.62	IPR001680
SMART	SM00320	WD40_4	834	877	0.022	IPR001680
SMART	SM00320	WD40_4	1016	1054	9.0E-6	IPR001680
SMART	SM00320	WD40_4	888	927	0.51	IPR001680
SMART	SM00320	WD40_4	1065	1105	3.0	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	1023	1063	12.546961	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	937	979	9.906923	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	1023	1056	10.363778	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	912	936	8.870959	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	1041	1055	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	957	971	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	914	928	4.0E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	1041	1055	4.0E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	957	971	4.0E-6	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	95	114	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	15	29	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	95	123	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	29	-	-
Coils	Coil	Coil	689	727	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K16240 (protein suppressor of PHYA-105 1 and protein SPA1-related 2)

Pathway:

ko04712 (Circadian rhythm - plant) map04712 (Circadian rhythm - plant)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G11110.1	SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants.
RefSeq	XP_017235822.1	PREDICTED: protein SPA1-RELATED 2 [Daucus carota subsp. sativus]
Swiss-Prot	Q9T014	Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2
TrEMBL	A0A162AYL5	WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008540 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	21.044792	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	18.245804	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	17.453995	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	19.518108	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	19.073881	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	21.086775	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	19.567572	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	21.775576	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	32.352379	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	36.683662	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	39.78437	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	30.660744	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	29.827574	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	22.15917	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	11.536592	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	11.370066	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	10.08336	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	14.579901	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	10.405125	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	11.950953	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	13.163358	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.991854	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	11.403113	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	11.974625	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	10.39555	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	18.459911	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	13.141723	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	13.002187	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	16.798157	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	9.398252		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	11.843697		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	10.454794		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	16.593327		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	8.944646		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	16.497295		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	8.142258		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	7.223489		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	6.696389		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	27.671728	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	22.539713	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	15.485877	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	8.958452	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	13.165974	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	15.912884	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	13.690068	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	9.464931	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	12.679755	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	9.203254	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	7.647539	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	7.715691	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg21401, jg38283, jg4742, jg7679
Aizoaceae	Mesembryanthemum crystallinum	3	gene_12461, gene_14681, gene_23565
Amaranthaceae	Atriplex hortensis	3	Ah004494, Ah008097, Ah022887
Amaranthaceae	Beta vulgaris	2	BVRB_1g003520, BVRB_5g099340
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg18651, Sbi_jg23996, Sbi_jg37085, Sbi_jg4000 ... Sbi_jg49209, Sbi_jg7824
Amaranthaceae	Salicornia europaea	3	Seu_jg12208, Seu_jg4907, Seu_jg6034
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000547, GOSA_00001091, GOSA_00006854
Amaranthaceae	Suaeda glauca	8	Sgl10963, Sgl16337, Sgl16365, Sgl23184, Sgl23197, Sgl28266 ... Sgl52160, Sgl57429
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000006155, gene:ENSEOMG00000011056 ... gene:ENSEOMG00000012712, gene:ENSEOMG00000021956, gene:ENSEOMG00000024032, gene:ENSEOMG00000027778, gene:ENSEOMG00000036606, gene:ENSEOMG00000043390, gene:ENSEOMG00000050270
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0001800, CQ.Regalona.r1.4AG0019630 ... CQ.Regalona.r1.4BG0019970, CQ.Regalona.r1.5AG0006200, CQ.Regalona.r1.5BG0006550
Anacardiaceae	Pistacia vera	4	pistato.v30005470, pistato.v30134820, pistato.v30134830 ... pistato.v30161140
Apiaceae	Apium graveolens	3	Ag11G03149, Ag3G00381, Ag6G00115
Arecaceae	Cocos nucifera	5	COCNU_06G002990, COCNU_06G004150, COCNU_14G000140 ... contig69346437G000010, contig69362463G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103708348, gene-LOC103709020, gene-LOC103713473 ... gene-LOC103721280, gene-LOC120112296
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1508.V1.1, AsparagusV1_01.1509.V1.1 ... AsparagusV1_05.2729.V1.1
Asteraceae	Flaveria trinervia	8	Ftri13G30603, Ftri14G11337, Ftri14G18322, Ftri15G03900 ... Ftri3G27466, Ftri3G31722, Ftri4G24176, Ftri7G23246
Brassicaceae	Arabidopsis thaliana	4	AT1G53090.1, AT2G46340.1, AT3G15354.1, AT4G11110.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10001291m.g.v1.0, Thhalv10011249m.g.v1.0 ... Thhalv10012045m.g.v1.0, Thhalv10020057m.g.v1.0, Thhalv10028383m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g39640.v2.2, Sp3g13540.v2.2, Sp4g28380.v2.2 ... Sp6g06310.v2.2
Brassicaceae	Brassica nigra	6	BniB01g049680.2N, BniB05g061940.2N, BniB06g027650.2N ... BniB08g030130.2N, BniB08g050940.2N, BniS06172g140.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G1036, Ceq03G0200
Casuarinaceae	Casuarina glauca	4	Cgl01G1149, Cgl01G1208, Cgl03G0226, Cgl03G0248
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g16740, gene.Cymno07g06000, gene.Cymno12g01770
Dunaliellaceae	Dunaliella salina	1	Dusal.0369s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g12060, gene.Thate07g17950, gene.Thate09g15220
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-11216, nbisL1-mrna-11217, nbisL1-mrna-8290 ... nbisL1-mrna-8291
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.748, evm.TU.LG05.1603, evm.TU.LG10.1503
Plantaginaceae	Plantago ovata	3	Pov_00005319, Pov_00028431, Pov_00031342
Plumbaginaceae	Limonium bicolor	3	Lb2G08269, Lb2G11186, Lb6G32293
Poaceae	Echinochloa crus-galli	6	AH02.3029, AH05.1331, BH02.3114, BH05.1504, CH02.3403 ... CH05.1703
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0031720, gene-QOZ80_1BG0081920 ... gene-QOZ80_5AG0362570, gene-QOZ80_5BG0410740
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0090370.1, HORVU.MOREX.r3.3HG0286130.1
Poaceae	Lolium multiflorum	3	gene-QYE76_055005, gene-QYE76_055006, gene-QYE76_057161
Poaceae	Oryza coarctata	4	Oco01G020160, Oco02G019610, Oco09G017270, Oco10G017070
Poaceae	Oryza sativa	2	LOC_Os01g52640.3, LOC_Os05g49590.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G261700, gene-BS78_09G241700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0505606, Pt_Chr0505671, Pt_Chr0602795, Pt_Chr0602796 ... Pt_Chr0602808
Poaceae	Sporobolus alterniflorus	10	Chr01G015840, Chr02G010760, Chr03G015280, Chr08G015340 ... Chr0G026410, Chr0G031010, Chr12G020890, Chr18G016590, Chr20G007260, Chr22G000840
Poaceae	Thinopyrum elongatum	2	Tel1E01G678500, Tel3E01G467500
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG060430, gene_TRIDC1BG069180 ... gene_TRIDC3AG042090, gene_TRIDC3BG047690
Poaceae	Triticum aestivum	5	TraesCS1D02G417600.1, TraesCS3A02G284700.2 ... TraesCS3B02G318600.1, TraesCS3D02G284500.2, TraesCS7A02G175900.1
Poaceae	Zea mays	6	Zm00001eb026560_P002, Zm00001eb154420_P004 ... Zm00001eb274370_P001, Zm00001eb296410_P001, Zm00001eb344140_P001, Zm00001eb361760_P002
Poaceae	Zoysia japonica	1	nbis-gene-12784
Poaceae	Zoysia macrostachya	2	Zma_g27411, Zma_g28832
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.723, evm.TU.LG04.3288, evm.TU.LG09.1894 ... evm.TU.LG16.312, evm.TU.LG19.1258, evm.TU.LG24.1260
Posidoniaceae	Posidonia oceanica	3	gene.Posoc08g10450, gene.Posoc09g05600, gene.Posoc09g08550
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_16_RagTag.106, evm.TU.Scaffold_5_RagTag.211 ... evm.TU.Scaffold_9_RagTag.176
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-21867, nbisL1-mrna-22351
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-13591, nbisL1-mrna-3278, nbisL1-mrna-4390 ... nbisL1-mrna-9099
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-10580, nbisL1-mrna-20376, nbisL1-mrna-7523
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.118, evm.TU.utg000006l.134 ... evm.TU.utg000022l.428
Rhizophoraceae	Kandelia obovata	3	Maker00013075, Maker00014245, Maker00017561
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-3569, nbisL1-mrna-6744, nbisL1-mrna-9156
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21701, nbisL1-mrna-6739, nbisL1-mrna-7085
Salicaceae	Populus euphratica	7	populus_peu00525, populus_peu00528, populus_peu03654 ... populus_peu17574, populus_peu27593, populus_peu34503, populus_peu38177
Solanaceae	Lycium barbarum	4	gene-LOC132620297, gene-LOC132632465, gene-LOC132634818 ... gene-LOC132636473
Solanaceae	Solanum chilense	4	SOLCI000577800, SOLCI002243500, SOLCI002865300 ... SOLCI005350500
Solanaceae	Solanum pennellii	4	gene-LOC107002639, gene-LOC107007180, gene-LOC107026003 ... gene-LOC107028458
Tamaricaceae	Reaumuria soongarica	3	STRG.23360_chr05_+, STRG.3284_chr01_+, STRG.9708_chr06_+
Tamaricaceae	Tamarix chinensis	3	TC01G4251, TC07G0211, TC09G2308
Zosteraceae	Zostera marina	2	Zosma01g23410.v3.1, Zosma05g03450.v3.1