Basic Information
Locus ID:
Ag6G00085
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
DWNN domain, A CCHC-type zinc finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 3200341 | 3206969 | - | Ag6G00085 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 87,736.69 Da | 59.90 | 57.07 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 291 | 333 | 3.30157E-13 | - |
| Pfam | PF08783 | DWNN domain | 3 | 79 | 6.5E-22 | IPR014891 |
| Pfam | PF13696 | Zinc knuckle | 207 | 227 | 1.9E-10 | IPR025829 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 205 | 229 | 2.88E-5 | IPR036875 |
| SUPERFAMILY | SSF57850 | RING/U-box | 286 | 362 | 8.7E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 271 | 373 | 9.6E-13 | IPR013083 |
| Gene3D | G3DSA:4.10.60.10 | - | 205 | 255 | 3.4E-18 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 83 | 3.6E-24 | - |
| SMART | SM01180 | DWNN_2 | 3 | 79 | 1.5E-25 | IPR014891 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 212 | 226 | 9.141752 | IPR001878 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 3 | 79 | 23.516739 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 679 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 741 | 772 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 590 | 608 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 703 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 119 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 0 |
| RefSeq | XP_017231852.1 | PREDICTED: uncharacterized protein LOC108206156 isoform X1 [Daucus carota subsp. sativus] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A068UQU6 | DWNN domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T00030512001 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.916673 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.467421 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.487962 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.651402 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.438515 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.327801 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.181001 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.574044 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.053847 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.293304 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 3.67851 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.992336 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.212661 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.838313 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.092585 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.184359 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.900355 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.900602 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.337494 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.401298 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.428962 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.575453 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.075203 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.160175 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.015823 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.221401 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.465444 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.608541 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.978576 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.297521 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.167194 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.407108 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.172898 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.713975 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.390912 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.586833 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.66641 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.350374 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.142466 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.391328 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.881146 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.976344 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.031229 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.176611 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.217118 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.547127 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.079957 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.587205 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.996285 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.750697 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37290 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14902 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004045, Ah022334 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g064150 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg24185, Sbi_jg58979, Sbi_jg63638, Sbi_jg8023 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12014, Seu_jg23247 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010778, GOSA_00012900 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02403, Sgl07553, Sgl52404, Sgl57689 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000006780, gene:ENSEOMG00000013503 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.3AG0023910, CQ.Regalona.r1.3BG0024800 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30142350 |
| Apiaceae | Apium graveolens | 8 | Ag2G01789, Ag2G02408, Ag6G00082, Ag6G00084, Ag6G00085 ... |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G000990, scaffold000355G000020 |
| Arecaceae | Phoenix dactylifera | 7 | gene-LOC103698876, gene-LOC103699329, gene-LOC103712571 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.3223.V1.1, AsparagusV1_05.101.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G02991, Ftri7G29153 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G17410.3, AT5G47430.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000768m.g.v1.0, Thhalv10024408m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g12130.v2.2, Sp7g16790.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB04g015090.2N, BniB05g019010.2N, BniB05g039610.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0714, Ceq08G1293 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0813, Cgl08G1321 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g00740 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1184s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g40340, gene.Thate04g22570 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11321, nbisL1-mrna-11322 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1180 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00004168, Pov_00011628, Pov_00011632, Pov_00011634 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G36845, Lb4G22122 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1928, BH01.2311, CH01.2417 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0180990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0603690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024350, gene-QYE76_024395 |
| Poaceae | Oryza coarctata | 2 | Oco19G004650, Oco20G004540 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g55710.1, LOC_Os03g21700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G228100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0405574, Pt_Chr0703421 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G009650, Chr13G015430 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G478300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG039550, gene_TRIDC6BG046500 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G256800.4, TraesCS6B02G268200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb047610_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-48019 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13281, Zma_g16079 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.957, evm.TU.LG17.948 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc03g01660, gene.Posoc05g02820, gene.Posoc05g02840 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_14_RagTag.369, evm.TU.Scaffold_16_RagTag.351 ... |
| Rhizophoraceae | Carallia pectinifolia | 15 | nbisL1-mrna-17990, nbisL1-mrna-20383, nbisL1-mrna-20384 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-15732, nbisL1-mrna-1890, nbisL1-mrna-2592 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-20177, nbisL1-mrna-21375, nbisL1-mrna-7114 ... |
| Rhizophoraceae | Kandelia candel | 4 | add.evm.TU.utg000003l.336, add.evm.TU.utg000022l.121 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00014490, Maker00014492, Maker00018615 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-16157, nbisL1-mrna-17098, nbisL1-mrna-17185 ... |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10724, nbisL1-mrna-4692, nbisL1-mrna-6522 |
| Salicaceae | Populus euphratica | 3 | populus_peu03017, populus_peu16629, populus_peu33899 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132607210, gene-LOC132631172, gene-LOC132644208 |
| Solanaceae | Solanum chilense | 3 | SOLCI001936000, SOLCI004210600, SOLCI007295500 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002368, gene-LOC107013099, gene-LOC107026427 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.11379_chr02_+, gene_14066, gene_15568 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3823, TC09G0341 |
| Zosteraceae | Zostera marina | 2 | Zosma06g30150.v3.1, Zosma06g30160.v3.1 |