halophFGD

Basic Information

Locus ID: Ag6G00053

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Autophagy-related protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	2106476	2109306	+	Ag6G00053

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.63	42,635.54 Da	31.82	87.12	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	100	391	1.59755E-52	-
Pfam	PF00400	WD domain, G-beta repeat	267	298	0.17	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	183	221	3.0E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	101	136	5.7E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	329	350	0.034	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	96	391	4.58E-66	IPR036322
Gene3D	G3DSA:2.130.10.10	-	235	392	3.3E-31	IPR015943
Gene3D	G3DSA:2.130.10.10	-	5	234	3.0E-34	IPR015943
SMART	SM00320	WD40_4	97	136	4.5E-5	IPR001680
SMART	SM00320	WD40_4	224	262	1.9	IPR001680
SMART	SM00320	WD40_4	181	221	2.0E-8	IPR001680
SMART	SM00320	WD40_4	265	304	7.7E-4	IPR001680
SMART	SM00320	WD40_4	139	178	0.021	IPR001680
SMART	SM00320	WD40_4	353	392	1.6E-4	IPR001680
SMART	SM00320	WD40_4	307	350	0.58	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	104	145	14.552052	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	188	230	12.279615	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	331	359	9.840087	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	360	392	9.282875	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	272	307	9.840087	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	188	225	9.54651	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	360	392	9.40565	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	104	141	11.022865	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	208	222	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	123	137	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	208	222	6.6E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	337	351	6.6E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	123	137	6.6E-8	IPR020472
Coils	Coil	Coil	47	67	-	-
Coils	Coil	Coil	4	31	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K17890 (autophagy-related protein 16-1)

Pathway:

ko04136 (Autophagy - other) map04136 (Autophagy - other) ko04138 (Autophagy - yeast) map04138 (Autophagy - yeast) ko04140 (Autophagy - animal) map04140 (Autophagy - animal) map04621 (NOD-like receptor signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G50230.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_017236112.1	PREDICTED: autophagy-related protein 16-like [Daucus carota subsp. sativus]
Swiss-Prot	Q6NNP0	Autophagy-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=ATG16 PE=1 SV=1
TrEMBL	A0A166EIV4	WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007461 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	17.001774	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	13.770846	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	12.207996	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	13.845366	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	13.176714	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	10.984145	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	13.877686	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	7.998139	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	9.952275	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	9.930222	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	9.310108	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	10.327271	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	9.496639	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	8.777934	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	8.492962	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	5.023118	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.11273	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	7.48304	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	6.829315	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	6.391815	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	8.087383	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	6.566197	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	6.230951	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	6.179773	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	6.26509	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	7.286884	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	6.049433	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	6.599076	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	5.596459	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.998178		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.279076		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.090768		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	6.843793		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.610831		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	7.257245		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.51809		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.869064		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.453425		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	5.782484	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	5.030472	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.644333	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	7.624311	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	9.595217	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	13.51039	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	11.639678	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	8.21318	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	12.031985	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	9.597108	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	11.926149	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	8.865094	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg12997
Aizoaceae	Mesembryanthemum crystallinum	1	gene_6552
Amaranthaceae	Atriplex hortensis	1	Ah028491
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg26691, Sbi_jg33873, Sbi_jg33874
Amaranthaceae	Salicornia europaea	1	Seu_jg15204
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00011782
Amaranthaceae	Suaeda glauca	2	Sgl74002, Sgl77506
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000004674, gene:ENSEOMG00000037015 ... gene:ENSEOMG00000038732
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.7AG0008680, CQ.Regalona.r1.7AG0014240 ... CQ.Regalona.r1.9BG0008780
Anacardiaceae	Pistacia vera	1	pistato.v30140420
Apiaceae	Apium graveolens	2	Ag5G00725, Ag6G00053
Arecaceae	Cocos nucifera	4	COCNU_03G003810, scaffold002938G000060 ... scaffold006188G000010, scaffold052431G000010
Arecaceae	Phoenix dactylifera	1	gene-LOC120107146
Asparagaceae	Asparagus officinalis	1	AsparagusV1_02.910.V1.1
Asteraceae	Flaveria trinervia	1	Ftri9G19330
Brassicaceae	Arabidopsis thaliana	1	AT5G50230.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10013321m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g12330.v2.2
Brassicaceae	Brassica nigra	2	BniB02g027290.2N, BniB02g027300.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq01G1858
Casuarinaceae	Casuarina glauca	1	Cgl01G2026
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g12830
Dunaliellaceae	Dunaliella salina	1	Dusal.0798s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g23200
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG10.1000
Plantaginaceae	Plantago ovata	1	Pov_00019685
Plumbaginaceae	Limonium bicolor	2	Lb5G26910, Lb5G26911
Poaceae	Echinochloa crus-galli	3	BH01.759, CH01.755, Contig309.106
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_3AG0216440, gene-QOZ80_3BG0261760
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.5HG0510100.1
Poaceae	Lolium multiflorum	1	gene-QYE76_061913
Poaceae	Oryza coarctata	2	Oco05G023410, Oco06G024300
Poaceae	Oryza sativa	1	LOC_Os03g53510.2
Poaceae	Paspalum vaginatum	1	gene-BS78_01G083300
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0107128
Poaceae	Sporobolus alterniflorus	2	Chr07G027400, Chr12G037790
Poaceae	Thinopyrum elongatum	1	Tel5E01G612500
Poaceae	Triticum dicoccoides	2	gene_TRIDC5AG056260, gene_TRIDC5BG060300
Poaceae	Triticum aestivum	1	TraesCS5D02G394200.1
Poaceae	Zea mays	1	Zm00001eb057050_P001
Poaceae	Zoysia japonica	2	nbis-gene-15041, nbis-gene-16127
Poaceae	Zoysia macrostachya	2	Zma_g2812, Zma_g493
Portulacaceae	Portulaca oleracea	2	evm.TU.LG03.1128, evm.TU.LG12.598
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g01660
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_11_RagTag.1102
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-14783
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14249
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-12651
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000010l.162
Rhizophoraceae	Kandelia obovata	1	Maker00009010
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-698
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-8732
Salicaceae	Populus euphratica	1	populus_peu28762
Solanaceae	Lycium barbarum	1	gene-LOC132632551
Solanaceae	Solanum chilense	1	SOLCI004735100
Solanaceae	Solanum pennellii	1	gene-LOC107015028
Tamaricaceae	Reaumuria soongarica	1	gene_11176
Tamaricaceae	Tamarix chinensis	1	TC08G2565
Zosteraceae	Zostera marina	1	Zosma04g00830.v3.1