halophFGD

Basic Information

Locus ID: Ag6G00019

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Late embryogenesis abundant protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	1433925	1434656	-	Ag6G00019

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.05	24,830.62 Da	29.53	100.94	0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03168	Late embryogenesis abundant protein	103	201	1.5E-8	IPR004864
SUPERFAMILY	SSF117070	LEA14-like	68	153	4.32E-6	-
Gene3D	G3DSA:2.60.40.1820	-	53	198	1.5E-5	-

Best hit

Source	Best Hit ID	Description
TAIR	AT2G46150.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family.
RefSeq	XP_017234276.1	PREDICTED: uncharacterized protein LOC108208268 [Daucus carota subsp. sativus]
TrEMBL	A0A166CZG9	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005365 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.625108	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.448621	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.891053	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.998041	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.636121	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.565791	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.738279	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.620512	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	4.678142	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.355816	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.508242	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.570465	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.952208	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.488494	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.436152	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	3.45662	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.571109	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	11.391623	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	4.421205	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	25.492947	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	20.855585	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.733312	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.220017	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.956434	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.630289	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.220193	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.38819	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.356279	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.365774	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.895622		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.527997		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.94856		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	30.890812		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	20.309385		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	45.831791		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	30.676092		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	12.593557		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	15.651439		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.779431	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.524399	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.115372	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.788497	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.680558	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	3.026712	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.909327	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.738494	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.437008	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.054158	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.711692	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.814078	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	19	jg13929, jg13930, jg13931, jg14672, jg18929, jg21566, jg2239 ... jg2240, jg2241, jg2242, jg23508, jg23509, jg24574, jg29613, jg33954, jg4762, jg4763, jg7669, jg7670
Aizoaceae	Mesembryanthemum crystallinum	1	gene_1678
Amaranthaceae	Atriplex hortensis	1	Ah031587
Amaranthaceae	Beta vulgaris	1	BVRB_7g156560
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg2099, Sbi_jg34414, Sbi_jg34416, Sbi_jg4056 ... Sbi_jg49250
Amaranthaceae	Salicornia europaea	3	Seu_jg2671, Seu_jg2672, Seu_jg5990
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00005823
Amaranthaceae	Suaeda glauca	4	Sgl11010, Sgl16418, Sgl71160, Sgl74742
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000008140, gene:ENSEOMG00000013625 ... gene:ENSEOMG00000032755, gene:ENSEOMG00000036448, gene:ENSEOMG00000042720, gene:ENSEOMG00000047432
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.1AG0003500, CQ.Regalona.r1.7AG0023440 ... CQ.Regalona.r1.7BG0026120
Anacardiaceae	Pistacia vera	5	pistato.v30005070, pistato.v30135270, pistato.v30135280 ... pistato.v30269690, pistato.v30269700
Apiaceae	Apium graveolens	12	Ag10G02564, Ag11G03785, Ag11G03786, Ag11G04061, Ag5G01773 ... Ag5G01774, Ag6G00019, Ag6G00713, Ag6G00714, Ag7G00163, Ag7G01306, Ag9G02773
Arecaceae	Cocos nucifera	7	COCNU_02G003540, COCNU_03G012410, COCNU_03G012420 ... COCNU_03G012430, COCNU_14G002040, contig69091338G000010, contig69108724G000010
Arecaceae	Phoenix dactylifera	7	gene-LOC103701379, gene-LOC103709005, gene-LOC103715222 ... gene-LOC103718550, gene-LOC103718555, gene-LOC103718557, gene-LOC103722246
Asparagaceae	Asparagus officinalis	5	AsparagusV1_01.1366.V1.1, AsparagusV1_03.998.V1.1 ... AsparagusV1_06.1402.V1.1, AsparagusV1_06.1403.V1.1, AsparagusV1_Unassigned.1095.V1.1
Asteraceae	Flaveria trinervia	8	Ftri10G29133, Ftri11G11217, Ftri12G13705, Ftri12G27519 ... Ftri14G17961, Ftri16G23575, Ftri17G14579, Ftri5G26473
Brassicaceae	Arabidopsis thaliana	4	AT1G64065.1, AT2G46150.1, AT3G54200.1, AT4G23610.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10001755m.g.v1.0, Thhalv10010532m.g.v1.0 ... Thhalv10023687m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g28210.v2.2, Sp5g08200.v2.2, Sp7g21530.v2.2
Brassicaceae	Brassica nigra	6	BniB01g001030.2N, BniB04g022550.2N, BniB05g013590.2N ... BniB06g000040.2N, BniB06g057450.2N, BniB08g068480.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G0262, Ceq03G0263, Ceq08G0850
Casuarinaceae	Casuarina glauca	2	Cgl03G0308, Cgl03G0309
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g12200, gene.Cymno04g11960, gene.Cymno06g03060
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate09g06640, gene.Thate09g15590, gene.Thate09g15600
Malvaceae	Hibiscus hamabo Siebold & Zucc.	7	nbisL1-mrna-11231, nbisL1-mrna-11767, nbisL1-mrna-1643 ... nbisL1-mrna-5372, nbisL1-mrna-7559, nbisL1-mrna-8360, nbisL1-mrna-8361
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.790, evm.TU.LG10.1468
Plantaginaceae	Plantago ovata	8	Pov_00005281, Pov_00005289, Pov_00005291, Pov_00005292 ... Pov_00007003, Pov_00030323, Pov_00031668, Pov_00039273
Plumbaginaceae	Limonium bicolor	1	Lb2G08285
Poaceae	Echinochloa crus-galli	8	AH02.3092, AH05.1662, AH07.1156, BH02.3170, BH05.1807 ... CH02.3355, CH04.1059, CH07.1013
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0032320, gene-QOZ80_1BG0082540 ... gene-QOZ80_2AG0108540, gene-QOZ80_2BG0162150, gene-QOZ80_5AG0365840, gene-QOZ80_5BG0413650
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0082740.1.CDS1 ... HORVU.MOREX.r3.3HG0287240.1.CDS1
Poaceae	Lolium multiflorum	2	gene-QYE76_016050, gene-QYE76_016052
Poaceae	Oryza coarctata	5	Oco01G019730, Oco02G020060, Oco03G007230, Oco09G014770 ... Oco10G014730
Poaceae	Oryza sativa	3	LOC_Os01g53470.1, LOC_Os02g16610.1, LOC_Os05g45070.1
Poaceae	Paspalum vaginatum	4	gene-BS78_03G268400, gene-BS78_04G114100, gene-BS78_K123500 ... gene-BS78_09G209200
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0602557
Poaceae	Sporobolus alterniflorus	8	Chr02G010290, Chr03G015650, Chr05G023110, Chr06G030840 ... Chr08G015730, Chr15G022320, Chr18G014450, Chr22G003120
Poaceae	Thinopyrum elongatum	2	Tel1E01G550100, Tel3E01G460000
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG041400, gene_TRIDC3BG046690
Poaceae	Triticum aestivum	5	TraesCS1A02G347000.1.cds1, TraesCS1B02G361200.1.cds1 ... TraesCS1D02G349900.1.cds1, TraesCS3A02G279000.1.cds1, TraesCS3B02G313300.1.cds1
Poaceae	Zea mays	3	Zm00001eb153970_P001, Zm00001eb203970_P001 ... Zm00001eb353610_P001
Poaceae	Zoysia japonica	2	nbis-gene-12844, nbis-gene-13850
Poaceae	Zoysia macrostachya	3	Zma_g15372, Zma_g27262, Zma_g8600
Portulacaceae	Portulaca oleracea	3	evm.TU.LG04.2223, evm.TU.LG06.83, evm.TU.LG26.119
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g27790, gene.Posoc03g22840, gene.Posoc09g08000
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_14_RagTag.151, evm.TU.Scaffold_1_RagTag.1057 ... evm.TU.Scaffold_2_RagTag.1280
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-10785, nbisL1-mrna-10802, nbisL1-mrna-18255 ... nbisL1-mrna-18256, nbisL1-mrna-21672, nbisL1-mrna-22373, nbisL1-mrna-3925, nbisL1-mrna-3957, nbisL1-mrna-6545
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-1503, nbisL1-mrna-2865, nbisL1-mrna-2866 ... nbisL1-mrna-3781, nbisL1-mrna-7168
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-18738, nbisL1-mrna-21149, nbisL1-mrna-7360 ... nbisL1-mrna-8579, nbisL1-mrna-8580
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000003l.81, add.evm.TU.utg000007l.161 ... add.evm.TU.utg000007l.162, add.evm.TU.utg000009l.164, add.evm.TU.utg000016l.366
Rhizophoraceae	Kandelia obovata	3	Maker00004830, Maker00016698, Maker00018341
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-17416, nbisL1-mrna-21142, nbisL1-mrna-21742 ... nbisL1-mrna-23208
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10945, nbisL1-mrna-13268, nbisL1-mrna-19599 ... nbisL1-mrna-23211
Salicaceae	Populus euphratica	6	populus_peu03623, populus_peu11551, populus_peu25213 ... populus_peu27633, populus_peu31619, populus_peu34465
Solanaceae	Lycium barbarum	7	gene-LOC132612328, gene-LOC132630851, gene-LOC132634049 ... gene-LOC132637071, gene-LOC132638064, gene-LOC132638065, gene-LOC132645522
Solanaceae	Solanum chilense	3	SOLCI000584000, SOLCI003424100, SOLCI003424200
Solanaceae	Solanum pennellii	4	gene-LOC107027464, gene-LOC107028077, gene-LOC107029507 ... gene-LOC107032512
Tamaricaceae	Reaumuria soongarica	3	STRG.1598_chr01_+, STRG.23395_chr05_-, gene_10518
Tamaricaceae	Tamarix chinensis	2	TC06G0177, TC06G0178
Zosteraceae	Zostera marina	4	Zosma01g28970.v3.1, Zosma02g17240.v3.1, Zosma05g24960.v3.1 ... Zosma06g11200.v3.1