Basic Information
Locus ID:
Ag6G00008
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Mitogen-activated protein kinase kinase kinase 7-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 1385049 | 1388298 | + | Ag6G00008 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 79,033.61 Da | 58.89 | 78.40 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 278 | 506 | 5.6E-38 | IPR001245 |
| Pfam | PF06760 | Protein of unknown function (DUF1221) | 21 | 238 | 1.2E-99 | IPR010632 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 236 | 533 | 5.76E-50 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 267 | 524 | 7.4E-51 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 241 | 514 | 30.407194 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 612 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 629 | 671 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 686 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 591 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41730.1 | Protein kinase family protein. | 0 |
| RefSeq | XP_017234375.1 | PREDICTED: tyrosine-protein kinase ABL1-like [Daucus carota subsp. sativus] | 0 |
| P25848 | Light-sensor Protein kinase OS=Ceratodon purpureus OX=3225 GN=PHY1 PE=3 SV=3 | 0 | |
| TrEMBL | A0A166CZR7 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005375 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.323741 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.507216 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.026634 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.396539 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.685264 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.440352 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.141255 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.597449 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.103556 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.502055 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.486555 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.535263 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.24733 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.174321 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.287405 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.353595 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.489933 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.158089 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.231801 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.160332 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.981692 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.483225 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.628468 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.116692 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.221937 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.1381 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.317713 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.340648 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.217155 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.124031 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.841487 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.168026 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.362262 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 74.368034 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.18359 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.214743 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.060072 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.066945 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.196488 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.174245 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.914266 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.29913 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.098487 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.088987 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.090465 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.53437 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.53968 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 107.523056 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 105.236481 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23533, jg29425 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1653, gene_24291 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah022888, Ah035297 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g023940 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21412, Sbi_jg22442, Sbi_jg4001, Sbi_jg49210 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16321, Seu_jg6033 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000546, GOSA_00016440 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl10964, Sgl16338, Sgl16366, Sgl62881, Sgl67490 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000015115, gene:ENSEOMG00000018401 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0001810, CQ.Regalona.r1.1BG0019680 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30005460, pistato.v30134840 |
| Apiaceae | Apium graveolens | 2 | Ag6G00008, Ag6G00114 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G012810, COCNU_14G000130 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703034, gene-LOC103708349, gene-LOC103713504 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2728.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G01450.1, AT1G64300.1, AT5G41730.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10009834m.g.v1.0, Thhalv10023305m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g00870.v2.2, Sp2g00460.v2.2, Sp7g00360.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g024490.2N, BniB02g000470.2N, BniB04g022720.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0201 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0227, Cgl03G0249 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g12720 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g15970 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.749, evm.TU.LG10.1502 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028430 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01742 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2458, AH02.2373, BH02.2477, CH01.2629, CH02.2661 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0025050, gene-QOZ80_1BG0075600 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0093020.1, HORVU.MOREX.r3.3HG0273160.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_006271, gene-QYE76_015122, gene-QYE76_053920 |
| Poaceae | Oryza coarctata | 3 | Oco01G014800, Oco09G017970, Oco10G017880 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g43350.1, LOC_Os05g50830.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G198600, gene-BS78_09G252200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0505783, Pt_Chr0603388, Pt_Chr0603429 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G015060, Chr05G018720, Chr18G016240 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G714800, Tel3E01G383900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG062560, gene_TRIDC1BG071730 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G424900.1.cds1, TraesCS1B02G459300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb344930_P001, Zm00001eb358440_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-24727, nbis-gene-50532 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10675, Zma_g28899 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG05.173, evm.TU.LG10.1002, evm.TU.LG17.1014 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g13980 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_14_RagTag.128, evm.TU.Scaffold_16_RagTag.107 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18283, nbisL1-mrna-21699 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-19436, nbisL1-mrna-4391, nbisL1-mrna-7533 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-20375, nbisL1-mrna-7382, nbisL1-mrna-8606 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000003l.221, evm.TU.utg000007l.319 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014287, Maker00018647 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15984, nbisL1-mrna-1718, nbisL1-mrna-3568 |
| Rhizophoraceae | Rhizophora mangle | 5 | nbisL1-mrna-10970, nbisL1-mrna-19573, nbisL1-mrna-5458 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu27594, populus_peu31587, populus_peu34502 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132608774, gene-LOC132634819, gene-LOC132645482 |
| Solanaceae | Solanum chilense | 3 | SOLCI002865400, SOLCI003907100, SOLCI004792900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107007931, gene-LOC107028092, gene-LOC107028459 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13875, gene_744 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G4254, TC02G0613 |
| Zosteraceae | Zostera marina | 2 | Zosma04g06820.v3.1, Zosma06g26040.v3.1 |