Basic Information
Locus ID:
Ag5G02900
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Alkylated DNA repair protein alkB homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 317256146 | 317259424 | - | Ag5G02900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 42,197.19 Da | 39.93 | 85.93 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02440 | AdoMet_MTases | 113 | 209 | 3.62141E-8 | - |
| Pfam | PF08241 | Methyltransferase domain | 114 | 204 | 4.6E-14 | IPR013216 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 65 | 226 | 1.98E-26 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 89 | 388 | 1.6E-55 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G36310.1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein. | 0 |
| RefSeq | XP_017216931.1 | PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q94A09 | tRNA (carboxymethyluridine(34)-5-O)-methyltransferase OS=Arabidopsis thaliana OX=3702 GN=TRM9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164SW18 | Methyltransf_11 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023858 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.688144 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.02549 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.006936 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.027124 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.951899 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.213076 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.289884 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.302699 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.751085 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.726308 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.997753 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.291236 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.306676 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.538301 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.326769 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.906704 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.944761 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.562055 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.961008 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.275697 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.490716 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.0614 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.54456 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.500637 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.225982 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.123623 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.047194 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.546188 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.807705 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.839128 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.749407 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.327533 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.211195 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.813951 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.820798 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.147119 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.574074 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.943972 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.918277 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.781553 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.326929 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.963855 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.204812 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.31253 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 8.309566 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.611967 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.37575 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.41057 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.001308 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.994888 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10550 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_875 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029619 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16017, Sbi_jg57010 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24663 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018425 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl19076 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007282, gene:ENSEOMG00000014549 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0016000, CQ.Regalona.r1.1BG0009630 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30040490 |
| Apiaceae | Apium graveolens | 1 | Ag5G02900 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G006500 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715224 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.160.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G22201, Ftri9G10693 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G36310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004311m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g30710.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g036540.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1981 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2163 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g10750 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0882s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate06g08520, gene.Thate06g15350, gene.Thate08g11490 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.998 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020689 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G11492, Lb4G22685 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3499, BH07.3315, CH07.3379 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0145920, gene-QOZ80_2BG0201460 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0614630.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_025389, gene-QYE76_025391, gene-QYE76_048294 |
| Poaceae | Oryza coarctata | 2 | Oco03G021730, Oco04G022370 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g51490.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G280300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203285 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G002120, Chr09G019920, Chr0G013310, Chr13G004160 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G544900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG045740, gene_TRIDC6BG053460 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G303100.1, TraesCS6B02G333000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb255040_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21820, nbis-gene-8693 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14440, Zma_g17153 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1270, evm.TU.LG05.1803 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g23410 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1037, evm.TU.Scaffold_8_RagTag.700 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9536 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19172, nbisL1-mrna-2147 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6858 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.786, evm.TU.utg000018l.544 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003714, Maker00010574 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8188 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9905 |
| Salicaceae | Populus euphratica | 1 | populus_peu32329 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627448 |
| Solanaceae | Solanum chilense | 1 | SOLCI005732700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015589 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.30787_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0521 |
| Zosteraceae | Zostera marina | 1 | Zosma01g29730.v3.1 |