halophFGD

Basic Information

Locus ID: Ag5G02894

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: receptor-like protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	317168892	317172481	+	Ag5G02894

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.19	65,896.40 Da	43.33	96.81	0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	298	556	3.1E-47	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	278	559	1.62E-71	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	370	587	1.2E-51	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	264	369	3.7E-27	-
SMART	SM00220	serkin_6	296	567	3.3E-31	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	296	567	36.357609	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	413	425	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G09440.1	Protein kinase superfamily protein.
RefSeq	XP_017216994.1	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LMB9	Cysteine-rich receptor-like protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRK1 PE=2 SV=2
TrEMBL	A0A161WQU5	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023861 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.285198	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.11069	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.255561	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.044414	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.057437	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.168315	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.165597	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.159383	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.040099	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.065008	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.412353	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.031094	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.362866	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg14631, jg2706
Anacardiaceae	Pistacia vera	1	pistato.v30090070
Apiaceae	Apium graveolens	1	Ag5G02894
Arecaceae	Cocos nucifera	1	scaffold001322G000030
Arecaceae	Phoenix dactylifera	1	gene-LOC103723957
Asparagaceae	Asparagus officinalis	1	AsparagusV1_02.1632.V1.1
Asteraceae	Flaveria trinervia	1	Ftri9G24805
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G2202
Casuarinaceae	Casuarina glauca	1	Cgl06G2321
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG03.2110
Plantaginaceae	Plantago ovata	4	Pov_00033052, Pov_00038843, Pov_00038844, Pov_00038845
Poaceae	Echinochloa crus-galli	3	AH02.2964, BH02.3047, CH02.3477
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_9AG0681750, gene-QOZ80_9BG0706520
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.6HG0591020.1
Poaceae	Lolium multiflorum	1	gene-QYE76_021051
Poaceae	Oryza coarctata	2	Oco21G005140, Oco22G006190
Poaceae	Oryza sativa	1	LOC_Os11g26140.1
Poaceae	Paspalum vaginatum	1	gene-BS78_05G135500
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0202315
Poaceae	Thinopyrum elongatum	1	Tel6E01G410400
Poaceae	Triticum dicoccoides	2	gene_TRIDC6AG032390, gene_TRIDC6BG038750
Poaceae	Triticum aestivum	3	TraesCS6A02G209100.1, TraesCS6B02G238100.1 ... TraesCS6D02G192600.1
Poaceae	Zea mays	1	Zm00001eb094200_P001
Poaceae	Zoysia japonica	1	nbis-gene-38699
Poaceae	Zoysia macrostachya	1	Zma_g18763
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_2_RagTag.1866
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-3250, nbisL1-mrna-7806, nbisL1-mrna-7807
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-16103, nbisL1-mrna-8416
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-13843, nbisL1-mrna-5418, nbisL1-mrna-5419
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000009l.172
Rhizophoraceae	Kandelia obovata	1	Maker00005406
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-16318
Salicaceae	Populus euphratica	4	populus_peu16027, populus_peu19429, populus_peu19443 ... populus_peu19444
Solanaceae	Lycium barbarum	1	gene-LOC132612938
Solanaceae	Solanum pennellii	2	gene-LOC107016837, gene-LOC114076832