Basic Information
Locus ID:
Ag5G02887
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ubiquitin-associated translation elongation factor EF1B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 317125255 | 317132029 | - | Ag5G02887 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 52,531.97 Da | 32.63 | 114.32 | 0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03222 | Tryptophan/tyrosine permease family | 101 | 481 | 1.5E-73 | IPR018227 |
| Gene3D | G3DSA:1.20.1740.10 | Amino acid/polyamine transporter I | 100 | 488 | 1.1E-8 | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19500.1 | Tryptophan/tyrosine permease. | 0 |
| RefSeq | XP_017216917.1 | PREDICTED: tyrosine-specific transport protein-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| P0AAD4 | Tyrosine-specific transport system OS=Escherichia coli (strain K12) OX=83333 GN=tyrP PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7AVN5 | Tryptophan/tyrosine permease (Fragment) OS=Davidia involucrata OX=16924 GN=Din_028614 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.33692 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.525767 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.415129 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.44538 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.000221 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.031739 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.362103 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.887627 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.314246 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 6.597157 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.325708 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 6.900541 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.449121 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.8166 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.16227 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.699146 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.243695 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 17.542873 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 21.60681 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.851746 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.452151 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.261269 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.543379 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.22219 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.779239 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.390572 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 14.043272 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 22.167433 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.257433 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 22.861197 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 32.645145 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 21.672554 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 51.346802 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 20.328026 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 46.373989 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.660269 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 17.928995 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.515135 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.875408 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 21.489893 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 33.64817 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.057269 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.105436 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.243457 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.609645 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.694909 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.963289 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.226387 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.734052 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.279738 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg8491, jg9804 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10162 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah005120, Ah005122 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g074330 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg17367, Sbi_jg17368, Sbi_jg62017 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg632 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015523 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl24307, Sgl29483, Sgl29514 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009335, gene:ENSEOMG00000028739 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0002670, CQ.Regalona.r1.4BG0002790 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30171190 |
| Apiaceae | Apium graveolens | 2 | Ag2G00700, Ag5G02887 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720558, gene-LOC120108598 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3262.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G10270, Ftri17G13260 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G19500.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013310m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g24900.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g044240.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0622, Ceq05G1687 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl02G0635, Cgl05G1681, Cgl05G1682, Cgl05G1685 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g04520 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g26790, gene.Thate08g20990 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.1022, evm.TU.LG09.43, evm.TU.LG10.231 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041521 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G15861, Lb6G30453 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.4314, AH03.3979, BH01.4620, BH01.4659, BH03.4298 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0241420, gene-QOZ80_3BG0286670 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0115940.1, HORVU.MOREX.r3.4HG0391170.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_039024, gene-QYE76_069249 |
| Poaceae | Oryza coarctata | 3 | Oco05G008450, Oco06G008750, Oco14G015890 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g14910.1, LOC_Os03g14915.1, LOC_Os07g46780.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G415100, gene-BS78_02G380400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102074, Pt_Chr0102095, Pt_Chr0305112 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G029780, Chr0G021040, Chr0G021410, Chr12G009740 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G261300, Tel4E01G384900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG015250, gene_TRIDC2BG018350 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G123900.1, TraesCS2B02G145800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb329970_P003 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-161, nbis-gene-2226, nbis-gene-2227 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1620, Zma_g7022 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1648, evm.TU.LG20.233 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g09600, gene.Posoc01g09610, gene.Posoc06g00050 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_12_RagTag.444, evm.TU.Scaffold_4_RagTag.1623 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24304, nbisL1-mrna-26116 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12934, nbisL1-mrna-20426 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19706, nbisL1-mrna-4445 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.893, evm.TU.utg000027l.299 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001208, Maker00017937 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2158, nbisL1-mrna-5687 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-11928, nbisL1-mrna-20662, nbisL1-mrna-9546 |
| Salicaceae | Populus euphratica | 3 | populus_peu06282, populus_peu11999, populus_peu20113 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600764 |
| Solanaceae | Solanum chilense | 1 | SOLCI000378500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002921, gene-LOC107017875 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4728 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2959 |
| Zosteraceae | Zostera marina | 2 | Zosma02g24420.v3.1, Zosma05g22350.v3.1 |