Basic Information
Locus ID:
Ag5G02882
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the glycosyltransferase 8 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 317034303 | 317042870 | - | Ag5G02882 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 60,358.39 Da | 30.52 | 98.83 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02537 | GT8_Glycogenin | 32 | 280 | 1.29479E-81 | - |
| Pfam | PF01501 | Glycosyl transferase family 8 | 68 | 140 | 1.9E-6 | IPR002495 |
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 31 | 278 | 3.04E-42 | IPR029044 |
| Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 30 | 280 | 4.6E-57 | IPR029044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18480.1 | plant glycogenin-like starch initiation protein 6. | 0 |
| RefSeq | XP_017216915.1 | PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Daucus carota subsp. sativus] | 0 |
| Q8GWB7 | Inositol phosphorylceramide glucuronosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=IPUT1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161X2X3 | Hexosyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023877 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 25.957146 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 27.578285 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 32.059662 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 35.359337 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 40.276531 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 49.786888 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 40.661114 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 47.919453 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 38.614292 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 39.585148 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 39.690037 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 40.850681 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 46.369621 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 40.34684 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 41.642185 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 41.752941 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 40.333984 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 39.829979 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 36.145592 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 44.300797 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 49.919765 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 47.052105 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 48.946873 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 51.844723 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 41.096916 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 37.411308 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 37.504337 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 41.18597 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 43.414806 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 27.386381 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 23.318758 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 19.242992 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 37.441269 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 34.193962 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 33.392231 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 27.78693 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 28.840921 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 29.091667 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 25.755039 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.863329 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 19.368708 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 76.423805 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 69.714775 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 93.604759 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 86.332909 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 96.186897 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 64.485825 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 42.812576 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 45.605453 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 47.78421 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2652 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11564 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006352 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g083510 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg16609, Sbi_jg17057, Sbi_jg61125 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg22881, Seu_jg22884, Seu_jg22887 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008130 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24951, Sgl26988, Sgl30095, Sgl38037 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009134, gene:ENSEOMG00000026948 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0011530 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30090780, pistato.v30266470 |
| Apiaceae | Apium graveolens | 1 | Ag5G02882 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G011990, COCNU_09G010180 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719910, gene-LOC120104371 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.1040.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri4G15058, Ftri6G17276, Ftri6G30623, FtriNA25251 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G18480.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10013196m.g.v1.0, Thhalv10020458m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g03220.v2.2, Sp6g25840.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g045280.2N, BniB06g058830.2N, BniB07g060090.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2411 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2530 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g02030 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0109s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g17230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2173 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040158 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G21753, Lb4G21754 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1581, BH09.1774, CH09.1904 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0310540, gene-QOZ80_4BG0341740 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0181880.1, HORVU.MOREX.r3.6HG0596440.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023759, gene-QYE76_047907 |
| Poaceae | Oryza coarctata | 4 | Oco03G015760, Oco04G016380, Oco07G010770, Oco08G010490 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g41520.1, LOC_Os04g43700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G159600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0204132, Pt_Chr0204155, Pt_Chr0204157, Pt_Chr0302074 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G008730, Chr25G010940, Chr26G011010, Chr30G010600 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G656100, Tel6E01G437700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG055120, gene_TRIDC2BG057860 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G381700.1, TraesCS2B02G399000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb426690_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-37090, nbis-gene-5277 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20053, Zma_g21620 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1298, evm.TU.LG20.1287 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g07490 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.335, evm.TU.Scaffold_2_RagTag.1886 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3282, nbisL1-mrna-7901 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3167, nbisL1-mrna-8971 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13829, nbisL1-mrna-5381 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.163, evm.TU.utg000012l.218 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005717, Maker00011070 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12875, nbisL1-mrna-7741 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16304, nbisL1-mrna-302 |
| Salicaceae | Populus euphratica | 1 | populus_peu16004 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132613933, gene-LOC132640139 |
| Solanaceae | Solanum chilense | 1 | SOLCI004011100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107015795, gene-LOC107018760 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_4928, gene_5559 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3331 |
| Zosteraceae | Zostera marina | 1 | Zosma03g24150.v3.1 |