Basic Information
Locus ID:
Ag5G02861
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Clathrin interactor EPSIN
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 316653072 | 316662855 | - | Ag5G02861 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 102,098.70 Da | 46.96 | 48.30 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03571 | ENTH | 26 | 142 | 1.45729E-62 | - |
| Pfam | PF01417 | ENTH domain | 26 | 145 | 9.9E-45 | IPR013809 |
| SUPERFAMILY | SSF48464 | ENTH/VHS domain | 7 | 150 | 7.72E-50 | IPR008942 |
| Gene3D | G3DSA:1.25.40.90 | - | 23 | 162 | 1.3E-56 | IPR008942 |
| SMART | SM00273 | enth_2 | 24 | 150 | 9.8E-55 | IPR013809 |
| ProSiteProfiles | PS50942 | ENTH domain profile. | 18 | 150 | 40.815788 | IPR013809 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 530 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 682 | 712 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 530 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 485 | - | - |
| Coils | Coil | Coil | 139 | 159 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43160.1 | ENTH/VHS family protein. | 0 |
| RefSeq | XP_017216903.1 | PREDICTED: clathrin interactor EPSIN 3 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q67YI9 | Clathrin interactor EPSIN 2 OS=Arabidopsis thaliana OX=3702 GN=EPSIN2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164SX02 | Clathrin interactor EPSIN 2-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 25.887463 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 20.706499 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.462349 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.623957 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.022501 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.357824 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.075167 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 15.782423 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.133219 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.91234 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 19.144373 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 19.102823 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.349321 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.717817 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.335979 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.289057 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 14.673463 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.290638 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.682532 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 24.984539 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 24.749262 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 17.287737 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.781141 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 18.989162 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.667057 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 23.301777 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.150229 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.265583 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.726372 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.681472 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.551915 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.923818 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.81521 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.381945 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 16.829865 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.335954 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.39482 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.263571 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.358985 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.700808 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.486678 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 81.589828 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 47.762661 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 17.848293 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.943953 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 51.624039 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 20.651312 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.912874 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 20.279936 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.533264 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10980, jg5902 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15486 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002354 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g112690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg32236, Sbi_jg57153 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24894 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027432 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53545, Sgl58807 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000004184, gene:ENSEOMG00000010139 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0014650, CQ.Regalona.r1.4BG0013020 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30242950 |
| Apiaceae | Apium graveolens | 2 | Ag5G02861, Ag9G00737 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G012080 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708455, gene-LOC103719843 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2040.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G22815, Ftri12G09293, Ftri2G33971 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G43160.3, AT3G59290.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001304m.g.v1.0, Thhalv10005771m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g25290.v2.2, Sp5g03810.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g002970.2N, BniB06g002060.2N, BniB08g028100.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1422 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1516 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g04210 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate03g06550, gene.Thate04g01530, gene.Thate04g12580 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.107 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021421 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08927 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3885, BH07.3680, CH07.3753 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0149730, gene-QOZ80_2BG0204500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0627470.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026783 |
| Poaceae | Oryza coarctata | 2 | Oco03G024750, Oco04G025280 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g56270.1 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206090, Pt_Chr0206110 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G000090, Chr09G016960, Chr0G008970, Chr0G012780 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G679100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG055970 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G375400.1, TraesCS6B02G413000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb191930_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-55952, nbis-gene-57888, nbis-gene-8378 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14661, Zma_g17371 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2677, evm.TU.LG08.302 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g07330 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1453, evm.TU.Scaffold_6_RagTag.1061 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-15596, nbisL1-mrna-1761 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1552, nbisL1-mrna-953 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2678, nbisL1-mrna-917 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.673, evm.TU.utg000019l.371 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00001688, Maker00006903, Maker00007752 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12292, nbisL1-mrna-13625 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12814, nbisL1-mrna-4184 |
| Salicaceae | Populus euphratica | 2 | populus_peu27040, populus_peu31015 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604444, gene-LOC132609130 |
| Solanaceae | Solanum chilense | 1 | SOLCI005610000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007157, gene-LOC107029798 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24536_chr08_- |
| Tamaricaceae | Tamarix chinensis | 4 | TC05G2490, TC06G0664, TC06G0665, TC06G0666 |
| Zosteraceae | Zostera marina | 2 | Zosma05g29440.v3.1, Zosma06g19330.v3.1 |