halophFGD

Basic Information

Locus ID: Ag5G02836

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: F-box kelch-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	316240601	316245241	-	Ag5G02836

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.31	49,948.36 Da	50.70	83.06	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	13	69	2.09E-7	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	6	60	1.5E-5	-
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	143	239	6.5E-12	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017241733.1	PREDICTED: putative F-box/LRR-repeat/kelch-repeat protein At1g11620 [Daucus carota subsp. sativus]	0
TrEMBL	A0A166AV86	F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010728 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	5.503538	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	4.539516	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.630721	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.431449	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.088968	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.719269	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.281003	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.564624	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	3.769311	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	3.365097	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.553319	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	4.03015	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	4.654162	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	3.48714	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.457913	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.644379	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.582019	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.116388	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.097839	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.392157	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.34708	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.651946	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.212078	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.702623	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.632619	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.601905	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.95468	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.823359	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	2.708117	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.699859		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.874473		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.559414		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.784395		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.319289		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.3226		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.641644		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.997732		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.286244		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.856774	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.613271	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.260188	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.015802	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.752176	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	4.485037	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.522142	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.446176	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	7.178271	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.11149	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.684699	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.198395	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	28	Ag11G04604, Ag1G01383, Ag3G00069, Ag3G01716, Ag5G02836 ... Ag6G00270, Ag6G00271, Ag6G00272, Ag7G00151, Ag7G00152, Ag7G00420, Ag7G00421, Ag7G00422, Ag7G00423, Ag7G00424, Ag7G02451, Ag9G00609, Ag9G00610, Ag9G02156, Ag9G02524, Ag9G02573, Ag9G02632, Ag9G02633, Ag9G02645, Ag9G02649, AgUnG00927, AgUnG00928, AgUnG01362