Basic Information
Locus ID:
Ag5G02831
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Cell division control protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 316119382 | 316123128 | - | Ag5G02831 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 23,799.03 Da | 22.61 | 92.84 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 33 | 124 | 2.1E-20 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 34 | 206 | 1.89E-38 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 30 | 136 | 9.5E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 137 | 210 | 7.1E-14 | - |
| SMART | SM00220 | serkin_6 | 6 | 203 | 6.7E-13 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 203 | 19.637085 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 92 | 104 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38620.2 | cyclin-dependent kinase B1;2. Encodes a member of a plant specific family of cyclin dependent kinases. | 0 |
| RefSeq | XP_017215784.1 | PREDICTED: cell division control protein 2 homolog C [Daucus carota subsp. sativus] | 0 |
| Q38774 | Cell division control protein 2 homolog C OS=Antirrhinum majus OX=4151 GN=CDC2C PE=2 SV=1 | 0 | |
| TrEMBL | A0A161X340 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023957 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.293436 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.248344 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.958737 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.699324 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.303307 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.515124 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.723583 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 126.124664 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 102.633812 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 115.114494 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 87.006157 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 69.112045 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 81.492332 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.780954 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.929179 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 28.930971 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.490765 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.559586 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.347636 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.884395 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 59.852165 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 64.819588 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 86.850067 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 62.784073 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.301247 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 34.307545 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 35.562237 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 34.913612 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.949213 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.516657 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.721726 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 44.046291 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.350675 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.717895 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 64.059685 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.320003 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.71608 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.504185 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.116328 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.476735 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.301378 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 85.138718 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 77.400803 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 59.249378 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg36688, jg36690, jg7896 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23012 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023653 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4233, Sbi_jg49570 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5670 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000985 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10634, Sgl15886 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013543, gene:ENSEOMG00000036260 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0010150, CQ.Regalona.r1.1BG0015700 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30248430 |
| Apiaceae | Apium graveolens | 2 | Ag5G02831, Ag8G01439 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G007200, COCNU_09G001270 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103711126, gene-LOC103716855, gene-LOC103721375 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2995.V1.1, AsparagusV1_10.995.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G01568, Ftri5G12397 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G48750.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005477m.g.v1.0, Thhalv10010585m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g13260.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g048910.2N, BniB06g023550.2N, BniB08g061990.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2754 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2895 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g04520 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0234s00004.v1.0, Dusal.4108s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate05g07900, gene.Thate05g07910, gene.Thate05g07920 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1231 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015069 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G07135, Lb1G07140, Lb5G27760 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.5089, AH07.221, BH01.5224, BH07.278, CH03.4636 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0099850, gene-QOZ80_2BG0153300 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0413490.2, HORVU.MOREX.r3.6HG0550810.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_003911, gene-QYE76_019852, gene-QYE76_071384 |
| Poaceae | Oryza coarctata | 4 | Oco03G001270, Oco04G001160, Oco05G001080, Oco06G001050 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g03060.1, LOC_Os03g01850.1, LOC_Os03g02680.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G504700, gene-BS78_04G018600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0100680, Pt_Chr0100770, Pt_Chr0201186 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G038740, Chr04G006260, Chr06G035740, Chr07G005370 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G580800, Tel6E01G181100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4BG059190, gene_TRIDC5AG074130 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4B02G353600.1, TraesCS4D02G347600.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb001260_P001, Zm00001eb203880_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-30079, nbis-gene-3139, nbis-gene-52138 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12107, Zma_g14862, Zma_g2232, Zma_g4567 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1733, evm.TU.LG11.1086 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g11940 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.1219, evm.TU.Scaffold_3_RagTag.910 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1104, nbisL1-mrna-17632 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-14585, nbisL1-mrna-14829, nbisL1-mrna-5922 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-17018, nbisL1-mrna-22654, nbisL1-mrna-6565 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.914, evm.TU.utg000019l.654 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006932, Maker00012764 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15723, nbisL1-mrna-5118 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19723, nbisL1-mrna-2927 |
| Salicaceae | Populus euphratica | 1 | populus_peu09232 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132600348, gene-LOC132604216, gene-LOC132635831 |
| Solanaceae | Solanum chilense | 3 | SOLCI000711500, SOLCI002707000, SOLCI005533300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107003205, gene-LOC107007603, gene-LOC107029008 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.271_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0253 |
| Zosteraceae | Zostera marina | 2 | Zosma01g31480.v3.1, Zosma05g33520.v3.1 |