Basic Information
Locus ID:
Ag5G02797
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase SD3-1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 315501840 | 315504509 | - | Ag5G02797 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 89,392.66 Da | 38.62 | 95.99 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12087 | TM_EGFR-like | 479 | 511 | 0.00411651 | - |
| CDD | cd00028 | B_lectin | 65 | 180 | 1.21333E-16 | IPR001480 |
| Pfam | PF01453 | D-mannose binding lectin | 120 | 195 | 6.3E-12 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 272 | 331 | 5.8E-9 | IPR000858 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 554 | 691 | 1.5E-20 | IPR001245 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 107 | 231 | 2.09E-22 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 532 | 775 | 1.8E-43 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 203 | 300 | 4.43E-9 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 509 | 614 | 4.5E-16 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 699 | 786 | 1.4E-6 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 58 | 179 | 3.8E-13 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 615 | 698 | 4.6E-22 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 180 | 299 | 4.0E-12 | IPR036426 |
| SMART | SM00108 | blect_4 | 62 | 180 | 7.8E-7 | IPR001480 |
| PIRSF | PIRSF000641 | SRK | 18 | 806 | 2.5E-134 | IPR024171 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 181 | 301 | 9.857597 | IPR001480 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 56 | 178 | 12.108198 | IPR001480 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 536 | 778 | 18.266088 | IPR000719 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41890.1 | curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein. | 0 |
| RefSeq | XP_017230386.1 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Daucus carota subsp. sativus] | 0 |
| P93756 | G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 OS=Arabidopsis thaliana OX=3702 GN=SD31 PE=3 SV=1 | 0 | |
| TrEMBL | A0A162B959 | Receptor-like serine/threonine-protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004199 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.961218 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.747118 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.610001 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.302441 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.374096 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.007789 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.648824 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.709338 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 28.186605 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 31.647923 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 37.753727 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 31.805986 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.332279 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 21.382271 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.676001 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.588276 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.279683 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.592798 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.979464 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.57649 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.792438 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.986031 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.090481 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.846401 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.723891 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.113619 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.586183 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.454446 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.66616 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.83588 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.931786 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.568146 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.319683 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.374621 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.154475 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.54894 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.833881 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.032716 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.481028 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.772134 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.978671 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.376807 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.327054 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.274668 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.449549 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.318224 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.961575 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.650188 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.516002 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.948044 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36152 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4666 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004852, Ah021758 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g061340, BVRB_4g071120 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018400 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl02660, Sgl02661, Sgl02676, Sgl07820, Sgl07821, Sgl07834 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010550, gene:ENSEOMG00000012970 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0020780, CQ.Regalona.r1.3BG0021590 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30086000 |
| Apiaceae | Apium graveolens | 2 | Ag3G01432, Ag5G02797 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G012200 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703682, gene-LOC103704599, gene-LOC120109070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.938.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G08554, Ftri16G26114 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G41890.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016288m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g24160.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g003790.2N, BniB08g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1084 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1231 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g20570 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2469, evm.TU.LG09.398 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1180, evm.TU.LG21.810 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g05470 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1185 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6434 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-580 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4241 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.337 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016913 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10975 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13383 |
| Salicaceae | Populus euphratica | 3 | populus_peu04450, populus_peu10978, populus_peu26117 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634841 |
| Solanaceae | Solanum chilense | 1 | SOLCI002139600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015303 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12863 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G1919, TC05G1920 |