halophFGD

Basic Information

Locus ID: Ag5G02750

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Type I inositol 1,4,5-trisphosphate 5-phosphatase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	314833932	314839376	-	Ag5G02750

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.93	147,973.23 Da	45.98	74.71	-0.60

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09074	INPP5c	771	1115	2.44751E-104	-
Pfam	PF03372	Endonuclease/Exonuclease/phosphatase family	776	1106	2.1E-13	IPR005135
SUPERFAMILY	SSF56219	DNase I-like	748	1135	2.45E-59	IPR036691
SUPERFAMILY	SSF50978	WD40 repeat-like	414	755	1.56E-21	IPR036322
Gene3D	G3DSA:2.130.10.10	-	363	750	1.1E-15	IPR015943
Gene3D	G3DSA:3.60.10.10	Endonuclease/exonuclease/phosphatase	751	1146	1.7E-100	IPR036691
SMART	SM00320	WD40_4	451	489	14.0	IPR001680
SMART	SM00320	WD40_4	610	665	30.0	IPR001680
SMART	SM00320	WD40_4	404	442	2.4	IPR001680
SMART	SM00128	i5p_5	769	1121	9.5E-81	IPR000300
SMART	SM00320	WD40_4	667	704	43.0	IPR001680
MobiDBLite	mobidb-lite	consensus disorder prediction	277	292	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	110	184	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1320	1336	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1295	1319	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	86	296	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	86	109	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1295	1336	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	23	62	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	245	273	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	74	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	22	-	-

Gene Ontology

Biological Process:

GO:0046856 (phosphatidylinositol dephosphorylation)

Molecular Function:

GO:0003824 (catalytic activity) GO:0005515 (protein binding) GO:0016791 (phosphatase activity)

KEGG Pathway

KO Term:

K01099 (inositol polyphosphate 5-phosphatase INPP5B/F [EC:3.1.3.36])

Pathway:

ko00562 (Inositol phosphate metabolism) map00562 (Inositol phosphate metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko04070 (Phosphatidylinositol signaling system) map04070 (Phosphatidylinositol signaling system)

Reaction:

R04404 (1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate + H2O <=> 1-Phosphatidyl-1D-myo-inositol 4-phosphate + Orthophosphate) R09827 (Phosphatidylinositol-3,4,5-trisphosphate + H2O <=> 1-Phosphatidyl-1D-myo-inositol 3,4-bisphosphate + Orthophosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G43900.1	Endonuclease/exonuclease/phosphatase family protein.
RefSeq	XP_017218519.1	PREDICTED: type I inositol polyphosphate 5-phosphatase 13-like isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	O80560	Type I inositol polyphosphate 5-phosphatase 12 OS=Arabidopsis thaliana OX=3702 GN=IP5P12 PE=1 SV=2
TrEMBL	A0A161WQN9	IPPc domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023791 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.951542	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.384228	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.163715	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.308347	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.551087	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.311581	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.209785	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.080632	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	5.788402	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.571962	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.028915	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	4.820602	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.474344	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.171033	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.130892	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.112888	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.01824	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	4.330297	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.576689	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.094397	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.071251	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.254585	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.027498	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.107364	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.077404	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.046745	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.258706		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.231663		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.287395		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	3.287878		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	6.863338		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	6.861713		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.954921		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.414722		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.669643		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.725802	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.76157	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.13963	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	3.883353	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.498364	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.016128	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.710916	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	3.925134	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	15.820163	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	11.983065	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg10935, jg13306, jg9842
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10156, gene_15743
Amaranthaceae	Atriplex hortensis	2	Ah005139, Ah019686
Amaranthaceae	Beta vulgaris	2	BVRB_3g059200, BVRB_4g074530
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17390, Sbi_jg4979, Sbi_jg62040, Sbi_jg6737
Amaranthaceae	Salicornia europaea	2	Seu_jg12919, Seu_jg653
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003781, GOSA_00015543
Amaranthaceae	Suaeda glauca	3	Sgl00555, Sgl05568, Sgl29457
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000009152, gene:ENSEOMG00000011754 ... gene:ENSEOMG00000030495, gene:ENSEOMG00000031261, gene:ENSEOMG00000043375
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0011590, CQ.Regalona.r1.3BG0011710 ... CQ.Regalona.r1.4AG0002820, CQ.Regalona.r1.4BG0002950
Anacardiaceae	Pistacia vera	2	pistato.v30038890, pistato.v30221410
Apiaceae	Apium graveolens	4	Ag11G03690, Ag1G00046, Ag5G02750, Ag8G01299
Arecaceae	Cocos nucifera	3	COCNU_02G008130, COCNU_11G002360, scaffold003697G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103715204, gene-LOC103722592
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.2040.V1.1, AsparagusV1_09.1682.V1.1 ... AsparagusV1_10.1295.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G14531, Ftri12G01313, Ftri17G01218
Brassicaceae	Arabidopsis thaliana	4	AT1G05630.1, AT1G65580.1, AT2G31830.2, AT2G43900.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10001286m.g.v1.0, Thhalv10006606m.g.v1.0 ... Thhalv10016160m.g.v1.0, Thhalv10018032m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g04480.v2.2, Sp4g14110.v2.2, Sp4g25990.v2.2 ... Sp5g20500.v2.2
Brassicaceae	Brassica nigra	6	BniB02g002460.2N, BniB03g001430.2N, BniB03g043170.2N ... BniB06g020860.2N, BniB06g044930.2N, BniB08g028680.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G1376, Ceq07G0258
Casuarinaceae	Casuarina glauca	2	Cgl06G1442, Cgl07G0246
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g00160, gene.Cymno05g06360
Dunaliellaceae	Dunaliella salina	1	Dusal.0256s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate06g19970, gene.Thate07g00050
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG11.465, evm.TU.LG12.230
Plantaginaceae	Plantago ovata	2	Pov_00025077, Pov_00038862
Plumbaginaceae	Limonium bicolor	5	Lb0G37887, Lb1G04267, Lb3G21174, Lb3G21179, Lb7G33447
Poaceae	Echinochloa crus-galli	9	AH03.2483, AH07.1752, AH08.2122, BH03.2624, BH07.1738 ... BH08.2235, CH03.2833, CH07.1593, CH08.2417
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0130870, gene-QOZ80_2BG0186120 ... gene-QOZ80_6AG0540400, gene-QOZ80_6BG0493710, gene-QOZ80_8AG0637880, gene-QOZ80_8BG0666350
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0391200.1, HORVU.MOREX.r3.5HG0492850.1 ... HORVU.MOREX.r3.7HG0682490.1
Poaceae	Lolium multiflorum	5	gene-QYE76_006399, gene-QYE76_007935, gene-QYE76_022112 ... gene-QYE76_030171, gene-QYE76_030180
Poaceae	Oryza coarctata	4	Oco04G010650, Oco15G010510, Oco17G008570, Oco18G008650
Poaceae	Oryza sativa	3	LOC_Os02g27620.1, LOC_Os08g41270.1, LOC_Os09g32440.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G230200, gene-BS78_04G134500 ... gene-BS78_07G197100
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0201854, Pt_Chr0201855, Pt_Chr0403701, Pt_Chr0403706 ... Pt_Chr0701510, Pt_Chr0701518
Poaceae	Sporobolus alterniflorus	8	Chr06G011620, Chr0G001140, Chr10G014860, Chr11G007380 ... Chr14G016580, Chr15G013370, Chr20G001560, Chr29G001930
Poaceae	Thinopyrum elongatum	3	Tel4E01G385300, Tel5E01G444100, Tel7E01G451100
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG011340, gene_TRIDC4BG039110 ... gene_TRIDC5AG041860, gene_TRIDC5BG045790, gene_TRIDC7AG033000, gene_TRIDC7BG024130
Poaceae	Triticum aestivum	9	TraesCS4A02G082700.1, TraesCS4B02G221300.1 ... TraesCS4D02G221700.1, TraesCS5A02G278100.1, TraesCS5B02G277500.1, TraesCS5D02G285100.2, TraesCS7A02G255500.2, TraesCS7B02G151900.2, TraesCS7D02G253900.2
Poaceae	Zea mays	5	Zm00001eb035960_P003, Zm00001eb102240_P001 ... Zm00001eb174880_P001, Zm00001eb241060_P002, Zm00001eb317410_P001
Poaceae	Zoysia japonica	5	nbis-gene-10393, nbis-gene-19025, nbis-gene-19426 ... nbis-gene-42651, nbis-gene-55974
Poaceae	Zoysia macrostachya	5	Zma_g16318, Zma_g23287, Zma_g30580, Zma_g30581, Zma_g32832
Portulacaceae	Portulaca oleracea	7	evm.TU.LG04.792, evm.TU.LG05.2137, evm.TU.LG06.1545 ... evm.TU.LG08.1384, evm.TU.LG11.900, evm.TU.LG15.1489, evm.TU.LG22.282
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g12210, gene.Posoc02g34630
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.1519, evm.TU.Scaffold_6_RagTag.543 ... evm.TU.Scaffold_3_RagTag.1563
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12811, nbisL1-mrna-15472
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-15837, nbisL1-mrna-20489
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-22522, nbisL1-mrna-435, nbisL1-mrna-436
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000010l.464, evm.TU.utg000011l.302 ... evm.TU.utg000019l.289
Rhizophoraceae	Kandelia obovata	3	Maker00001975, Maker00006896, Maker00008896
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1177, nbisL1-mrna-13775, nbisL1-mrna-5393
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-12932, nbisL1-mrna-20459, nbisL1-mrna-3705
Salicaceae	Populus euphratica	4	populus_peu06647, populus_peu20538, populus_peu22459 ... populus_peu23863
Solanaceae	Lycium barbarum	3	gene-LOC132604308, gene-LOC132609280, gene-LOC132616131
Solanaceae	Solanum chilense	2	SOLCI002246200, SOLCI003029900
Solanaceae	Solanum pennellii	5	gene-LOC107004647, gene-LOC107005773, gene-LOC107006083 ... gene-LOC107024969, gene-LOC107028043
Tamaricaceae	Reaumuria soongarica	3	STRG.28005_chr04_-, gene_12475, gene_6447
Tamaricaceae	Tamarix chinensis	3	TC01G1323, TC02G2976, TC12G1828
Zosteraceae	Zostera marina	3	Zosma01g32200.v3.1, Zosma03g17510.v3.1, Zosma04g26790.v3.1