Basic Information
Locus ID:
Ag5G02714
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 313838966 | 313849329 | - | Ag5G02714 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 48,299.95 Da | 50.82 | 87.25 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 85 | 427 | 4.67E-15 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 67 | 432 | 1.3E-9 | IPR015943 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12920.5 | - | 0 |
| RefSeq | XP_017216394.1 | PREDICTED: uncharacterized protein LOC108194017 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164STU0 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023759 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.291584 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.993652 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.443383 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.377065 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.139638 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.255551 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 7.809705 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.099129 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.656671 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 9.857331 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 4.662953 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.447843 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.298697 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.67374 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.627967 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.217896 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.209639 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.148491 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.113888 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.003222 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.786603 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.777783 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.713866 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.948865 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.162711 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.26194 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.183689 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.032349 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.06069 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.593667 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.502048 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.343591 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.406208 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.114247 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.56363 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.639613 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.649531 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.726063 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.249757 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.382993 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.860789 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.624745 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.261885 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.847709 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16286 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11665 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004947 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g072170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17934, Sbi_jg62565 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1141 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007097 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23910, Sgl29079, Sgl74432, Sgl77986 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000009251, gene:ENSEOMG00000043193 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001020, CQ.Regalona.r1.4BG0001150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30052270 |
| Apiaceae | Apium graveolens | 1 | Ag5G02714 |
| Arecaceae | Cocos nucifera | 1 | scaffold000339G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711385, gene-LOC120107781 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3333.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G23724 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G12920.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015483m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g31040.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g006000.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2026 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1999 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g06110 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0375s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g08230 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG09.294, evm.TU.LG09.295, evm.TU.LG10.1168 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015047 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb7G33194, Lb7G33196 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.2415, BH07.2231, CH07.2299 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0135840, gene-QOZ80_2BG0191370 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0589950.2 |
| Poaceae | Oryza coarctata | 3 | Oco03G014010, Oco04G014400, Oco04G015620 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g37856.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G179200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0100744, Pt_Chr0204400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G012960, Chr13G008830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G400900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG031290, gene_TRIDC6BG037740 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G205100.1, TraesCS6B02G225500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb245730_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29788 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13791 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1791, evm.TU.LG20.107 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g10730 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.1074 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29948 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3563 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16439 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015714 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4548 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20727 |
| Salicaceae | Populus euphratica | 1 | populus_peu04356 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644062 |
| Solanaceae | Solanum chilense | 1 | SOLCI002849000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003228 |
| Zosteraceae | Zostera marina | 1 | Zosma03g07580.v3.1 |