Basic Information
Locus ID:
Ag5G02713
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 313807123 | 313813199 | + | Ag5G02713 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 52,506.16 Da | 59.92 | 80.93 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 449 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12070.1 | 0 | |
| RefSeq | XP_017216279.1 | PREDICTED: uncharacterized protein LOC108193935 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164STT2 | Nuclear pore complex protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023758 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.610904 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.286397 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.527011 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.934543 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.509935 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.371102 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.789082 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.083601 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.431535 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.072732 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.71637 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.631261 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.409968 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.726131 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.169405 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.652872 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.727867 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 29.707584 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.14867 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 19.240561 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.706566 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 53.770653 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 43.519974 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 36.51997 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 37.528973 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.276971 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.164357 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.454592 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.597477 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.188029 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.173389 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.338129 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.137267 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.854983 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.739557 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.910417 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.473288 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.603245 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.117126 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.080258 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.282032 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.650385 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.041533 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.030657 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.145205 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.830407 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.259499 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.606377 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.852223 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.595284 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16289, jg8586 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11664 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g072190 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17940, Sbi_jg62567 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1143 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007096 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23908, Sgl29077 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009664, gene:ENSEOMG00000028473 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001000, CQ.Regalona.r1.4BG0001130 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30052320 |
| Apiaceae | Apium graveolens | 3 | Ag10G01697, Ag5G02713, Ag9G01427 |
| Arecaceae | Cocos nucifera | 3 | COCNU_11G010600, scaffold000339G000020 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103702304, gene-LOC103705374, gene-LOC103711408 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1255.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G22389 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G12070.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028621m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g05430.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g056770.2N, BniB08g049250.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2024 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1997 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g05880, gene.Cymno05g08270 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate04g08240, gene.Thate04g08250, gene.Thate09g11700 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.290 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024470 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G04563, Lb3G15633, Lb7G33195, Lb7G33197 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.2402, AH07.3230, BH03.2527, BH07.3058, CH03.2726 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0143420, gene-QOZ80_2BG0198820 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0490790.1, HORVU.MOREX.r3.6HG0609680.1 |
| Poaceae | Oryza coarctata | 4 | Oco03G019870, Oco04G020680, Oco17G007910, Oco18G008130 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g48640.1, LOC_Os09g31360.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G223900, gene-BS78_04G255600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203532, Pt_Chr0501144 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G003640, Chr09G021600, Chr0G001490, Chr0G001500 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G425900, Tel6E01G513600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG042960, gene_TRIDC6BG050390 |
| Poaceae | Triticum aestivum | 5 | TraesCS5A02G265100.1, TraesCS5B02G264700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb252800_P001, Zm00001eb316700_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-19487, nbis-gene-22022, nbis-gene-8907 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14282, Zma_g17030, Zma_g32790 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG22.617 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g17410, gene.Posoc03g10710 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.1073 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29949 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3562 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16438 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.648 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015745 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4547 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20728 |
| Salicaceae | Populus euphratica | 2 | populus_peu04355, populus_peu35159 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643767 |
| Solanaceae | Solanum chilense | 1 | SOLCI003492000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003350 |
| Zosteraceae | Zostera marina | 4 | Zosma02g23340.v3.1, Zosma03g07600.v3.1, Zosma03g28890.v3.1 ... |