halophFGD

Basic Information

Locus ID: Ag5G02644

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Casein Kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	309354090	309365853	+	Ag5G02644

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.29	40,724.85 Da	58.85	59.51	-0.69

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	36	160	4.19E-20	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	28	121	1.3E-27	-
SMART	SM00220	serkin_6	36	340	0.0024	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	36	365	9.135524	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	42	73	-	IPR017441
MobiDBLite	mobidb-lite	consensus disorder prediction	1	32	-	-
Coils	Coil	Coil	183	206	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K02218 (casein kinase 1 [EC:2.7.11.1])

Pathway:

ko04011 (MAPK signaling pathway - yeast) map04011 (MAPK signaling pathway - yeast) ko04392 (Hippo signaling pathway - multiple species) map04392 (Hippo signaling pathway - multiple species)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G13670.1	Protein kinase family protein.
RefSeq	XP_017219021.1	PREDICTED: uncharacterized protein LOC108196303 [Daucus carota subsp. sativus]
Swiss-Prot	Q852L0	Casein kinase 1-like protein HD16 OS=Oryza sativa subsp. japonica OX=39947 GN=HD16 PE=1 SV=1
TrEMBL	A0A6P3ZTU8	casein kinase 1-like protein HD16 OS=Ziziphus jujuba OX=326968 GN=LOC107415090 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	25.299614	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	15.704795	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	14.663038	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	14.723174	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	14.780539	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	13.961484	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	16.602909	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	20.720087	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	21.425045	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	21.01004	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	21.997175	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	23.180836	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	20.762651	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	21.221331	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	5.421382	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	6.976044	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.007973	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	9.961884	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	6.414612	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	8.156016	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	11.836033	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	11.670129	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	12.047579	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	14.473924	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	12.179206	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	10.80951	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	11.116434	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	10.548469	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	12.798339	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.918591		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	5.584805		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.304381		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	5.565527		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	11.322002		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	7.026494		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.759073		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.64161		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.267608		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	7.569809	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	5.448713	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	4.563026	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	15.136773	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	12.946136	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	13.568228	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	10.761321	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	18.904812	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	12.946221	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	15.984209	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	14.205241	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	12.508271	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg11317
Amaranthaceae	Salicornia europaea	1	Seu_jg19283
Amaranthaceae	Chenopodium album	1	gene:ENSEOMG00000050458
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.7AG0015870
Apiaceae	Apium graveolens	7	Ag10G01019, Ag2G01421, Ag3G02853, Ag5G02644, Ag7G00328 ... Ag9G02634, AgUnG00714
Brassicaceae	Arabidopsis thaliana	1	AT3G03930.1
Plantaginaceae	Plantago ovata	1	Pov_00006816
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_1AG0013370, gene-QOZ80_1AG0035100 ... gene-QOZ80_5AG0401950
Poaceae	Lolium multiflorum	1	gene-QYE76_061267
Poaceae	Thinopyrum elongatum	2	Tel5E01G675600, Tel5E01G676300
Poaceae	Zea mays	3	Zm00001eb068790_P001, Zm00001eb146020_P001 ... Zm00001eb389340_P001
Poaceae	Zoysia japonica	1	nbis-gene-31212
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-2944
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-13148, nbisL1-mrna-15291
Solanaceae	Solanum chilense	1	SOLCI004132400
Zosteraceae	Zostera marina	2	Zosma05g13380.v3.1, Zosma05g13390.v3.1