halophFGD

Basic Information

Locus ID: Ag5G02617

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Oxidation resistance protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	307761006	307766730	-	Ag5G02617

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.80	37,412.53 Da	43.80	68.89	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07534	TLD	189	326	3.8E-28	IPR006571
SMART	SM00584	109ultra	163	327	1.3E-27	IPR006571
ProSiteProfiles	PS51886	TLDc domain profile.	164	327	25.258102	IPR006571
MobiDBLite	mobidb-lite	consensus disorder prediction	129	155	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	128	155	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT2G05590.2	TLD-domain containing nucleolar protein.
RefSeq	XP_017228224.1	PREDICTED: TLD domain-containing protein 2-like [Daucus carota subsp. sativus]
Swiss-Prot	Q8N573	Oxidation resistance protein 1 OS=Homo sapiens OX=9606 GN=OXR1 PE=1 SV=2
TrEMBL	A0A175Y916	TLDc domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000354 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	9.073905	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	9.512388	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	8.814711	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	8.569501	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	11.524957	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	9.124128	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	8.784026	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	6.878163	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	14.322854	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	15.510526	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	15.87358	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	13.459847	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	14.857777	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	16.497356	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	25.040445	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	27.509892	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	35.324757	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	24.54229	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	22.883865	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	31.739668	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	28.169134	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	24.185043	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	24.65988	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	26.273655	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	27.480444	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	21.2981	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	24.445072	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	16.838886	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	24.36426	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.020049		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.900283		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.76188		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	8.737799		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	12.544066		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	11.566851		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	9.233349		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.336342		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	6.604002		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	5.923893	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	5.655251	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	6.242651	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	42.934101	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	27.81793	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	13.818696	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	16.027077	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	38.985832	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	23.010056	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	18.482079	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	18.981634	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	21.46097	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg1011, jg28747, jg39507
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15932, gene_23714
Amaranthaceae	Atriplex hortensis	2	Ah019167, Ah027327
Amaranthaceae	Beta vulgaris	2	BVRB_3g048270, BVRB_6g135150
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg12708, Sbi_jg37944, Sbi_jg52050, Sbi_jg53198 ... Sbi_jg6083
Amaranthaceae	Salicornia europaea	2	Seu_jg28231, Seu_jg8697
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00006164, GOSA_00010316
Amaranthaceae	Suaeda glauca	12	Sgl00904, Sgl05445, Sgl05858, Sgl05982, Sgl21888, Sgl27168 ... Sgl33555, Sgl39208, Sgl43260, Sgl48088, Sgl77998, Sgl80503
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000000880, gene:ENSEOMG00000001473 ... gene:ENSEOMG00000003278, gene:ENSEOMG00000015440, gene:ENSEOMG00000018929, gene:ENSEOMG00000024407, gene:ENSEOMG00000032529, gene:ENSEOMG00000044360
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.3BG0000980, CQ.Regalona.r1.6AG0024220 ... CQ.Regalona.r1.6BG0025560
Anacardiaceae	Pistacia vera	2	pistato.v30196530, pistato.v30239770
Apiaceae	Apium graveolens	5	Ag4G01482, Ag4G02487, Ag5G02181, Ag5G02617, Ag8G01452
Arecaceae	Cocos nucifera	3	COCNU_05G005940, COCNU_07G001310, COCNU_10G000970
Arecaceae	Phoenix dactylifera	5	gene-LOC103703894, gene-LOC103711327, gene-LOC103715422 ... gene-LOC120103700, gene-LOC120108983
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.199.V1.1, AsparagusV1_08.2187.V1.1
Asteraceae	Flaveria trinervia	2	Ftri12G18805, Ftri17G05096
Brassicaceae	Arabidopsis thaliana	2	AT2G05590.2, AT4G39870.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10002628m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g24070.v2.2, Sp7g36020.v2.2
Brassicaceae	Brassica nigra	4	BniB01g032880.2N, BniB02g010820.2N, BniB02g089000.2N ... BniB05g000180.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G1745, Ceq07G1251
Casuarinaceae	Casuarina glauca	2	Cgl06G1810, Cgl07G1327
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno09g04760, gene.Cymno10g00690, gene.Cymno11g06780
Dunaliellaceae	Dunaliella salina	1	Dusal.0738s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate05g28180, gene.Thate08g00520, gene.Thate08g24240
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10164, nbisL1-mrna-5050, nbisL1-mrna-6728
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.662, evm.TU.LG11.740
Plantaginaceae	Plantago ovata	1	Pov_00020966
Plumbaginaceae	Limonium bicolor	5	Lb1G05910, Lb2G11752, Lb5G27297, Lb5G27816, Lb7G32933
Poaceae	Echinochloa crus-galli	9	AH03.955, AH06.849, AH07.3523, BH03.1113, BH06.891, CH06.929 ... BH07.3340, CH03.1258, CH07.3403
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_2AG0146180, gene-QOZ80_2BG0201690 ... gene-QOZ80_6AG0514290, gene-QOZ80_6BG0465990, gene-QOZ80_7AG0565040
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.6HG0613660.2, HORVU.MOREX.r3.7HG0665270.1
Poaceae	Lolium multiflorum	4	gene-QYE76_025452, gene-QYE76_028615, gene-QYE76_028781 ... gene-QYE76_041691
Poaceae	Oryza coarctata	5	Oco03G021950, Oco04G022580, Oco11G005520, Oco13G006150 ... Oco14G006760
Poaceae	Oryza sativa	3	LOC_Os02g51770.1, LOC_Os06g11790.1, LOC_Os07g25700.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G088800, gene-BS78_04G282800 ... gene-BS78_10G092400
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0203249, Pt_Chr0304032, Pt_Chr0404831, Pt_Chr0405886
Poaceae	Sporobolus alterniflorus	7	Chr09G019730, Chr0G034040, Chr11G019860, Chr13G003890 ... Chr21G003430, Chr24G006060, Chr28G005430
Poaceae	Thinopyrum elongatum	3	Tel2E01G434700, Tel6E01G541400, Tel7E01G337400
Poaceae	Triticum dicoccoides	3	gene_TRIDC6AG045400, gene_TRIDC6BG053030 ... gene_TRIDC7BG012760
Poaceae	Triticum aestivum	6	TraesCS6A02G300200.1, TraesCS6B02G329900.1 ... TraesCS6D02G280100.1, TraesCS7A02G180000.1, TraesCS7B02G085200.1, TraesCS7D02G181500.1
Poaceae	Zea mays	3	Zm00001eb194150_P003, Zm00001eb306200_P001 ... Zm00001eb372700_P001
Poaceae	Zoysia japonica	6	nbis-gene-1141, nbis-gene-21791, nbis-gene-21792 ... nbis-gene-51444, nbis-gene-57388, nbis-gene-8663
Poaceae	Zoysia macrostachya	4	Zma_g14458, Zma_g17173, Zma_g29363, Zma_g6381
Portulacaceae	Portulaca oleracea	5	evm.TU.LG04.2545, evm.TU.LG05.649, evm.TU.LG08.152 ... evm.TU.LG11.1382, evm.TU.LG25.670
Posidoniaceae	Posidonia oceanica	2	gene.Posoc04g15380, gene.Posoc06g01660
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_6_RagTag.1655
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-1625, nbisL1-mrna-17511
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-15161, nbisL1-mrna-16148
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12109, nbisL1-mrna-2563, nbisL1-mrna-2564
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000011l.1006, evm.TU.utg000019l.451
Rhizophoraceae	Kandelia obovata	2	Maker00002277, Maker00008303
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-15118, nbisL1-mrna-6255
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-2003, nbisL1-mrna-4417
Salicaceae	Populus euphratica	3	populus_peu13775, populus_peu21599, populus_peu22930
Solanaceae	Lycium barbarum	3	gene-LOC132604336, gene-LOC132609872, gene-LOC132614112
Solanaceae	Solanum chilense	3	SOLCI001763600, SOLCI004776200, SOLCI006618200
Solanaceae	Solanum pennellii	3	gene-LOC107005874, gene-LOC107018026, gene-LOC107031324
Tamaricaceae	Reaumuria soongarica	2	gene_12584, gene_3521
Tamaricaceae	Tamarix chinensis	2	TC05G1460, TC11G0811
Zosteraceae	Zostera marina	2	Zosma01g38320.v3.1, Zosma03g33940.v3.1