Basic Information
Locus ID:
Ag5G02585
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 305824525 | 305826144 | - | Ag5G02585 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 38,921.09 Da | 63.56 | 94.08 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 131 | 174 | 4.36444E-16 | - |
| Pfam | PF13639 | Ring finger domain | 131 | 174 | 2.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 110 | 185 | 2.22E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 179 | 6.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 132 | 173 | 3.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 132 | 174 | 12.813844 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43420.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017216509.1 | PREDICTED: RING-H2 finger protein ATL16-like [Daucus carota subsp. sativus] | 0 |
| Q9LSW9 | RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161ZLU2 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024244 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.708987 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.760508 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.707505 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.004295 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.963698 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.162939 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.831409 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 3.659269 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 4.678328 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.500346 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.601995 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.584483 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.312217 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.987349 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.921401 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.878509 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.108437 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.157912 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.977872 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.748612 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.193679 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.115934 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.011435 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.074312 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.079014 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.526026 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.974916 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.752277 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.52097 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.440358 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.16886 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.052953 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.378593 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.900078 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.47328 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.17087 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.106631 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.478907 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.438686 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.60514 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.670625 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg11098, jg12695, jg27791, jg35414, jg8706 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_15977, gene_15980, gene_19317 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000202, Ah018307 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g049310, BVRB_5g121000 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14789, Sbi_jg31452, Sbi_jg55571, Sbi_jg57822 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25466, Seu_jg26125 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018012, GOSA_00019556 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01036, Sgl06070, Sgl06124, Sgl54410, Sgl59739 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000000847, gene:ENSEOMG00000007251 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0007850, CQ.Regalona.r1.3BG0007890 ... |
| Apiaceae | Apium graveolens | 3 | Ag2G02318, Ag5G02585, Ag8G01524 |
| Arecaceae | Cocos nucifera | 4 | COCNU_07G010150, COCNU_08G010950, COCNU_09G008530 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103700032, gene-LOC103705563, gene-LOC103719452 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G10869, Ftri15G29084 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G04360.1, AT5G43420.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003389m.g.v1.0, Thhalv10009604m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g03170.v2.2, Sp2g08300.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g001700.2N, BniB02g060890.2N, BniB06g046510.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1311 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1374 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g03300 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g21990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5021 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.831 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00002212, Pov_00002213, Pov_00002277, Pov_00025452 |
| Poaceae | Echinochloa crus-galli | 5 | AH05.1517, BH01.4893, BH05.1666, BH07.3786, CH05.1886 |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0150770, gene-QOZ80_2BG0206170 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0408390.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_026358, gene-QYE76_030806, gene-QYE76_030832 ... |
| Poaceae | Oryza coarctata | 6 | Oco03G025530, Oco04G026020, Oco05G003040, Oco06G003050 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g57460.1, LOC_Os03g05560.1, LOC_Os08g44950.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G479300, gene-BS78_04G322600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604128 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G004430, Chr07G007140, Chr12G002260, Chr15G000560 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel4E01G523200, Tel6E01G718100, Tel7E01G448200 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC4AG055160, gene_TRIDC4BG053450 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS4A02G415800.1.cds1, TraesCS4B02G316600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb038810_P001, Zm00001eb191210_P001 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-17685, nbis-gene-2885, nbis-gene-39787 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g14728, Zma_g17435, Zma_g2058, Zma_g24553, Zma_g4414 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2899, evm.TU.LG11.1444 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g13030, gene.Posoc06g06860 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.1263, evm.TU.Scaffold_5_RagTag.1089 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11557, nbisL1-mrna-15833, nbisL1-mrna-1587 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-16170, nbisL1-mrna-16862, nbisL1-mrna-483 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-10300, nbisL1-mrna-2521, nbisL1-mrna-726 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000006l.136, add.evm.TU.utg000011l.209 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002130 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-19265, nbisL1-mrna-20696, nbisL1-mrna-22902 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-1959, nbisL1-mrna-19799, nbisL1-mrna-4253 |
| Salicaceae | Populus euphratica | 3 | populus_peu07514, populus_peu21530, populus_peu32843 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132609806, gene-LOC132610045, gene-LOC132618693 |
| Solanaceae | Solanum chilense | 4 | SOLCI001669500, SOLCI002981400, SOLCI006499700 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107015422, gene-LOC107022745, gene-LOC107030619 ... |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G0692, TC01G0873, TC07G2382 |
| Zosteraceae | Zostera marina | 1 | Zosma01g24530.v3.1 |