Basic Information
Locus ID:
Ag5G02535
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ethylene-responsive protein kinase Le-CTR1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 302109837 | 302117568 | + | Ag5G02535 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 126,124.47 Da | 57.41 | 85.41 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 831 | 1107 | 1.8E-35 | IPR000719 |
| Pfam | PF14381 | Ethylene-responsive protein kinase Le-CTR1 | 670 | 747 | 3.3E-12 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 784 | 1109 | 1.34E-52 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 69 | 270 | 1.36E-27 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 38 | 290 | 1.0E-33 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 785 | 1124 | 1.3E-50 | - |
| SMART | SM00364 | LRR_bac_2 | 179 | 198 | 160.0 | - |
| SMART | SM00364 | LRR_bac_2 | 202 | 221 | 36.0 | - |
| SMART | SM00220 | serkin_6 | 791 | 1111 | 2.3E-33 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 225 | 248 | 47.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 83 | 106 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 179 | 202 | 3.4 | IPR003591 |
| SMART | SM00364 | LRR_bac_2 | 225 | 244 | 13.0 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 791 | 1110 | 33.785221 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 227 | 248 | 7.935275 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 181 | 202 | 7.735057 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 932 | 944 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 182 | 195 | 7.0E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 225 | 238 | 7.0E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 501 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 501 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 334 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04210.1 | Leucine-rich repeat protein kinase family protein. Encodes a putative Raf-related kinase. | 0 |
| RefSeq | XP_017218750.1 | PREDICTED: uncharacterized protein LOC108196133 [Daucus carota subsp. sativus] | 0 |
| Q2MHE4 | Serine/threonine/tyrosine-protein kinase HT1 OS=Arabidopsis thaliana OX=3702 GN=HT1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161X3P0 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024187 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.294577 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.789486 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.662752 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.203972 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.493853 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.439589 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.604783 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 17.105885 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 51.930595 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 47.978493 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 54.881413 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 58.888031 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 45.58709 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 34.012569 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.359974 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.203932 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.361082 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.418774 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.7287 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.371337 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.249934 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.301926 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.686239 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.412209 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.209539 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.430211 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.970963 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.552923 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.948082 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.971478 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.419101 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.046341 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 11.541715 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.77304 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.205153 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.714316 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.136656 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.227518 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 24.203989 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.6531 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.838566 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.692706 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.781643 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 25.641731 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.718147 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.208551 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 18.423809 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.954491 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.143339 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 15.896333 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12609 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4254 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020547 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg51631, Sbi_jg5590 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13333 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016981 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl03476, Sgl08586 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014794, gene:ENSEOMG00000029920 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0015630, CQ.Regalona.r1.3BG0016210 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30236070 |
| Apiaceae | Apium graveolens | 1 | Ag5G02535 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G001510 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697568 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.1929.V1.1, AsparagusV1_08.1931.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G21735 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G04210.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000396m.g.v1.0, Thhalv10006614m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g03030.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g001590.2N, BniB06g046660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0352 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1874, Cgl07G0357 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g13140 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g20830 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.951 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00000180, Pov_00000182, Pov_00010287, Pov_00010290 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07972 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.782, CH01.777, Contig309.119 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0216650, gene-QOZ80_3BG0261920 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0509880.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G023290, Oco06G024180 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g53250.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G084600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107116 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G005540, Chr04G028400, Chr07G027350, Chr12G037890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G610200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG056000, gene_TRIDC5BG060020 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G383000.2, TraesCS5B02G387500.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb004230_P001, Zm00001eb056920_P002 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15037, nbis-gene-16117 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2820, Zma_g498 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2033, evm.TU.LG14.332 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02300 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.795 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15899 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16757 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-669 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.488 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007613 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15278 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3519 |
| Salicaceae | Populus euphratica | 2 | populus_peu07438, populus_peu21450 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132612355 |
| Solanaceae | Solanum chilense | 1 | SOLCI000277700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031048 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.6304_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1982 |
| Zosteraceae | Zostera marina | 1 | Zosma05g17910.v3.1 |