halophFGD

Basic Information

Locus ID: Ag5G02491

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the glycosyl hydrolase 13 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	298857239	298859484	+	Ag5G02491

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.88	47,646.01 Da	33.88	77.27	-0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd11314	AmyAc_arch_bac_plant_AmyA	31	377	7.90752E-160	-
Pfam	PF00128	Alpha amylase, catalytic domain	57	214	6.4E-13	IPR006047
Pfam	PF07821	Alpha-amylase C-terminal beta-sheet domain	368	425	1.5E-18	IPR012850
SUPERFAMILY	SSF51445	(Trans)glycosidases	23	359	1.06E-74	IPR017853
SUPERFAMILY	SSF51011	Glycosyl hydrolase domain	371	426	1.22E-18	-
Gene3D	G3DSA:2.60.40.1180	-	371	427	4.5E-24	IPR013780
Gene3D	G3DSA:3.20.20.80	Glycosidases	29	370	3.4E-144	-
SMART	SM00810	alpha-amyl_c2	367	427	7.5E-31	IPR012850
SMART	SM00642	aamy	29	366	2.4E-47	IPR006047
PIRSF	PIRSF001028	Alpha-amylase_plant	6	428	1.1E-219	IPR013775
PRINTS	PR00110	Alpha-amylase signature	109	120	1.7E-5	IPR006046
PRINTS	PR00110	Alpha-amylase signature	201	212	1.7E-5	IPR006046
PRINTS	PR00110	Alpha-amylase signature	305	317	1.7E-5	IPR006046

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0004556 (alpha-amylase activity) GO:0005509 (calcium ion binding) GO:0043169 (cation binding)

KEGG Pathway

KO Term:

K01176 (alpha-amylase [EC:3.2.1.1])

Pathway:

ko00500 (Starch and sucrose metabolism) map00500 (Starch and sucrose metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Reaction:

R02108 (Starch + H2O <=> Dextrin + Starch) R02112 (Starch <=> Dextrin + Maltose) R11262 (Maltodextrin + H2O <=> Maltose)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G25000.1	alpha-amylase-like. Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).
RefSeq	XP_017218607.1	PREDICTED: alpha-amylase [Daucus carota subsp. sativus]
Swiss-Prot	P17859	Alpha-amylase OS=Vigna mungo OX=3915 GN=AMY1.1 PE=2 SV=1
TrEMBL	A0A161Y5C8	alpha-amylase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024593 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	94.364616	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	112.673973	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	154.766281	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	166.740768	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	158.538239	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	164.217422	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	82.809509	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	40.777157	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	8.294713	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	8.249169	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	7.207529	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	4.598455	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	4.042819	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	3.799268	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.847943	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.689495	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.934125	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.992537	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.824645	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.365584	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1.773633	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	4.704736	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	5.266296	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	5.835386	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	4.131713	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.346196	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	2.076365	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	2.581309	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.71778	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.293432		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.802073		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.704004		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	8.55443		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.093252		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	7.149311		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.013309		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.836571		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.522637		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.068182	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.222991	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.082143	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.071015	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.358021	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.961245	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.294324	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.41087	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.046101	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	7.146429	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	9.989235	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	6.108087	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg11975
Aizoaceae	Mesembryanthemum crystallinum	8	gene_17112, gene_17902, gene_18983, gene_18984, gene_20013 ... gene_25146, gene_26707, gene_4577
Amaranthaceae	Atriplex hortensis	8	Ah009601, Ah009602, Ah009611, Ah017759, Ah017761, Ah017762 ... Ah038513, Ah038516
Amaranthaceae	Beta vulgaris	4	BVRB_9g213260, BVRB_9g213270, BVRB_9g213280, BVRB_9g213370
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg12301, Sbi_jg47289, Sbi_jg47292
Amaranthaceae	Salicornia europaea	2	Seu_jg21560, Seu_jg21562
Amaranthaceae	Suaeda glauca	2	Sgl55525, Sgl60745
Amaranthaceae	Chenopodium album	12	gene:ENSEOMG00000008859, gene:ENSEOMG00000013627 ... gene:ENSEOMG00000016560, gene:ENSEOMG00000019470, gene:ENSEOMG00000030592, gene:ENSEOMG00000036495, gene:ENSEOMG00000038498, gene:ENSEOMG00000038898, gene:ENSEOMG00000044194, gene:ENSEOMG00000050027, gene:ENSEOMG00000052094, gene:ENSEOMG00000052627
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.7BG0002320, CQ.Regalona.r1.7BG0002330 ... CQ.Regalona.r1.7BG0002400, CQ.Regalona.r1.8BG0003100, CQ.Regalona.r1.9AG0022270, CQ.Regalona.r1.9AG0022330, CQ.Regalona.r1.9AG0022340
Anacardiaceae	Pistacia vera	1	pistato.v30045260
Apiaceae	Apium graveolens	1	Ag5G02491
Arecaceae	Cocos nucifera	2	scaffold000431G000020, scaffold000431G000030
Arecaceae	Phoenix dactylifera	4	gene-LOC103722582, gene-LOC103722583, gene-LOC120104902 ... gene-LOC120104903
Asparagaceae	Asparagus officinalis	1	AsparagusV1_06.1812.V1.1
Asteraceae	Flaveria trinervia	1	Ftri16G22637
Brassicaceae	Arabidopsis thaliana	1	AT4G25000.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10025232m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp7g23000.v2.2
Brassicaceae	Brassica nigra	2	BniB05g012250.2N, BniB05g021450.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G2110, Ceq07G2147
Casuarinaceae	Casuarina glauca	3	Cgl03G2251, Cgl07G2375, Cgl07G2376
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1267
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2122, evm.TU.LG06.435
Plantaginaceae	Plantago ovata	1	Pov_00027632
Plumbaginaceae	Limonium bicolor	5	Lb2G12055, Lb2G12058, Lb4G21549, Lb7G35566, Lb7G35567
Poaceae	Echinochloa crus-galli	29	AH02.2502, AH03.2166, AH03.2167, AH06.2731, AH06.2968 ... AH07.3596, AH08.1805, AH08.1809, BH02.2600, BH03.2226, BH03.2227, BH03.2228, BH03.2229, BH03.2230, BH03.2258, BH03.2259, BH06.2529, BH06.2750, BH07.3404, BH08.1895, BH08.1896, BH09.2990, CH02.2829, CH03.2495, CH03.2496, CH06.2828, CH06.3094, CH07.3479, CH08.2070
Poaceae	Eleusine coracana subsp. coracana	19	gene-QOZ80_2AG0146880, gene-QOZ80_2AG0146890 ... gene-QOZ80_2BG0202380, gene-QOZ80_3AG0249460, gene-QOZ80_3BG0278720, gene-QOZ80_6AG0527430, gene-QOZ80_6AG0537550, gene-QOZ80_6AG0537560, gene-QOZ80_6AG0550700, gene-QOZ80_6BG0481390, gene-QOZ80_6BG0490780, gene-QOZ80_6BG0490790, gene-QOZ80_6BG0504260, gene-QOZ80_8AG0626420, gene-QOZ80_8AG0634180, gene-QOZ80_8AG0634190, gene-QOZ80_8BG0655500, gene-QOZ80_8BG0663180, gene-QOZ80_8BG0663200
Poaceae	Hordeum vulgare	12	HORVU.MOREX.r3.5HG0486500.1, HORVU.MOREX.r3.6HG0617430.1 ... HORVU.MOREX.r3.6HG0617450.1, HORVU.MOREX.r3.6HG0617470.1, HORVU.MOREX.r3.6HG0617480.1, HORVU.MOREX.r3.6HG0617490.1, HORVU.MOREX.r3.6HG0617500.1, HORVU.MOREX.r3.6HG0617510.1, HORVU.MOREX.r3.6HG0619750.1, HORVU.MOREX.r3.7HG0721060.1, HORVU.MOREX.r3.7HG0721200.1, HORVU.MOREX.r3.7HG0721210.1
Poaceae	Lolium multiflorum	8	gene-QYE76_005697, gene-QYE76_005699, gene-QYE76_025612 ... gene-QYE76_025615, gene-QYE76_031148, gene-QYE76_055969, gene-QYE76_055974, gene-QYE76_056101
Poaceae	Oryza coarctata	11	Oco03G022560, Oco04G023220, Oco12G017370, Oco15G012800 ... Oco16G009690, Oco16G009730, Oco17G006530, Oco17G006540, Oco17G006550, Oco18G006760, Oco18G006770
Poaceae	Oryza sativa	7	LOC_Os02g52700.1, LOC_Os02g52710.1, LOC_Os06g49970.2 ... LOC_Os08g36900.1, LOC_Os08g36910.1, LOC_Os09g28400.1, LOC_Os09g28420.1
Poaceae	Paspalum vaginatum	7	gene-BS78_01G178100, gene-BS78_02G204300, gene-BS78_K053500 ... gene-BS78_02G204400, gene-BS78_07G164400, gene-BS78_10G275900, gene-BS78_K318400
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0104496, Pt_Chr0104497, Pt_Chr0203158, Pt_Chr0203159 ... Pt_Chr0400930, Pt_Chr0400931, Pt_Chr0401010, Pt_Chr0401011
Poaceae	Sporobolus alterniflorus	10	Chr02G033240, Chr05G000580, Chr09G019110, Chr13G003340 ... Chr13G003350, Chr14G015190, Chr17G015070, Chr29G003980, Chr29G003990, Chr29G007370
Poaceae	Thinopyrum elongatum	9	Tel4E01G479600, Tel5E01G385800, Tel5E01G386100 ... Tel5E01G386200, Tel5E01G734800, Tel6E01G566700, Tel6E01G567100, Tel6E01G588600, Tel7E01G650200
Poaceae	Triticum dicoccoides	18	gene_TRIDC4BG049100, gene_TRIDC5AG037650 ... gene_TRIDC5AG066560, gene_TRIDC5BG039760, gene_TRIDC5BG071480, gene_TRIDC5BG071520, gene_TRIDC6AG047990, gene_TRIDC6AG049900, gene_TRIDC6AG049910, gene_TRIDC6BG055940, gene_TRIDC6BG055970, gene_TRIDC6BG055980, gene_TRIDC6BG058390, gene_TRIDC6BG058410, gene_TRIDC7AG053480, gene_TRIDC7BG046090, gene_TRIDC7BG046100, gene_TRIDC7BG046190
Poaceae	Triticum aestivum	30	TraesCS4B02G285400.1, TraesCS4B02G285600.1 ... TraesCS4D02G284400.1, TraesCS5A02G238100.1, TraesCS5A02G464500.1, TraesCS5B02G236600.1, TraesCS5B02G475700.1, TraesCS5B02G476000.1, TraesCS5D02G245000.1, TraesCS5D02G477100.1, TraesCS6A02G319300.1, TraesCS6A02G334100.1, TraesCS6A02G334200.1, TraesCS6B02G349500.1, TraesCS6B02G349700.1, TraesCS6B02G349800.1, TraesCS6B02G364800.1, TraesCS6B02G364900.1, TraesCS6D02G298500.1, TraesCS6D02G313300.1, TraesCS6D02G313500.1, TraesCS7A02G383200.1, TraesCS7A02G383900.1, TraesCS7A02G384000.1, TraesCS7B02G286000.1, TraesCS7B02G286100.1, TraesCS7B02G286700.1, TraesCS7D02G379700.1, TraesCS7D02G380400.1, TraesCS7D02G380500.1
Poaceae	Zea mays	5	Zm00001eb038060_P001, Zm00001eb100790_P001 ... Zm00001eb255870_P001, Zm00001eb311720_P001, Zm00001eb311730_P001
Poaceae	Zoysia japonica	11	nbis-gene-17202, nbis-gene-17204, nbis-gene-19668 ... nbis-gene-21725, nbis-gene-30611, nbis-gene-40766, nbis-gene-43289, nbis-gene-55854, nbis-gene-8607, nbis-gene-8608, nbis-gene-9576
Poaceae	Zoysia macrostachya	8	Zma_g14498, Zma_g17213, Zma_g22841, Zma_g24217, Zma_g24218 ... Zma_g30441, Zma_g32668, Zma_g33401
Portulacaceae	Portulaca oleracea	13	evm.TU.LG01.549, evm.TU.LG02.710, evm.TU.LG02.712 ... evm.TU.LG04.214, evm.TU.LG05.441, evm.TU.LG05.442, evm.TU.LG05.60, evm.TU.LG09.1881, evm.TU.LG09.1883, evm.TU.LG10.80, evm.TU.LG17.75, evm.TU.LG25.1273, evm.TU.LG25.880
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g30550
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_8_RagTag.954
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-8869
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-20664, nbisL1-mrna-20665
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000018l.301
Rhizophoraceae	Kandelia obovata	1	Maker00003502
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-11424
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-23829
Salicaceae	Populus euphratica	1	populus_peu31978
Solanaceae	Lycium barbarum	2	gene-LOC132627863, gene-LOC132627865
Solanaceae	Solanum chilense	2	SOLCI002762200, SOLCI004793700
Solanaceae	Solanum pennellii	1	gene-LOC107013022
Tamaricaceae	Reaumuria soongarica	4	gene_10148, gene_10149, gene_10944, gene_8015
Tamaricaceae	Tamarix chinensis	1	TC08G2210