halophFGD

Basic Information

Locus ID: Ag5G02453

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: RIBOSOMAL protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	296037296	296039094	-	Ag5G02453

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.69	6,596.77 Da	37.16	66.67	-0.73

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00471	Ribosomal protein L33	11	55	5.2E-13	IPR001705
SUPERFAMILY	SSF57829	Zn-binding ribosomal proteins	4	55	2.38E-14	IPR011332
Gene3D	G3DSA:2.20.28.120	Ribosomal protein L33	3	57	5.9E-25	IPR038584
TIGRFAM	TIGR01023	rpmG_bact: ribosomal protein bL33	4	57	6.1E-20	IPR001705
ProSitePatterns	PS00582	Ribosomal protein L33 signature.	24	42	-	IPR018264

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003735 (structural constituent of ribosome)

Cellular Component:

GO:0005840 (ribosome)

KEGG Pathway

KO Term:

K02913 (large subunit ribosomal protein L33)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G06320.1	Ribosomal protein L33 family protein.
RefSeq	XP_017255609.1	PREDICTED: 50S ribosomal protein L33-like [Daucus carota subsp. sativus]
Swiss-Prot	Q3YSN4	Large ribosomal subunit protein bL33 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rpmG PE=3 SV=2
TrEMBL	A0A164W7H2	50S ribosomal protein L33 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021248 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	17.840729	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	18.708647	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	12.39176	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	12.251627	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	11.388911	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	12.357405	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	11.981684	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	12.497951	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	20.054031	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	26.617561	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	18.185492	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	22.142172	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	18.333248	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	26.21456	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	28.686378	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	29.683969	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	46.477428	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	23.9599	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	20.001911	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	14.797462	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	19.492069	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	33.439476	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	52.669632	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	50.92012	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	47.955036	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	23.98316	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	36.066578	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	27.101536	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	25.02527	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.596542		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	5.209205		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.685851		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	8.168268		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	30.937439		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	7.978606		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	16.600252		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	13.692056		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	14.914036		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	14.764695	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	7.303394	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.979434	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	17.397295	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	26.31777	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	40.96706	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	31.74317	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	27.515741	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	39.645111	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	83.404823	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	84.555992	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	77.169273	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg12478
Amaranthaceae	Beta vulgaris	2	BVRB_1g009630, BVRB_2g033650
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg2898
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.1AG0012360, CQ.Regalona.r1.1BG0008740 ... CQ.Regalona.r1.1BG0013680
Apiaceae	Apium graveolens	1	Ag5G02453
Arecaceae	Cocos nucifera	1	COCNU_07G009880
Asteraceae	Flaveria trinervia	3	Ftri10G08483, Ftri15G04256, Ftri9G27875
Brassicaceae	Arabidopsis thaliana	2	AT3G06320.1, AT5G18790.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10015229m.g.v1.0, Thhalv10022246m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g05230.v2.2, Sp6g25600.v2.2
Brassicaceae	Brassica nigra	3	BniB02g043950.2N, BniB05g045020.2N, BniB08g009540.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq09G1239
Casuarinaceae	Casuarina glauca	1	Cgl09G1327
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g01320
Dunaliellaceae	Dunaliella salina	1	Dusal.0393s00014.v1.0
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4168
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG05.1562
Plumbaginaceae	Limonium bicolor	1	Lb7G34158
Poaceae	Oryza sativa	1	LOC_Os05g37884.1
Poaceae	Paspalum vaginatum	2	gene-BS78_09G200200, gene-BS78_10G075900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0602707
Poaceae	Sporobolus alterniflorus	4	Chr01G017060, Chr12G004300, Chr12G004320, Chr19G003160
Poaceae	Thinopyrum elongatum	2	Tel1E01G571500, Tel3E01G490700
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG049510, gene_TRIDC1BG056240 ... gene_TRIDC3AG044210, gene_TRIDC3BG050100
Poaceae	Triticum aestivum	6	TraesCS1A02G333400.1.cds1, TraesCS1B02G346800.1.cds1 ... TraesCS1D02G336000.1.cds1, TraesCS3A02G303700.1.cds1, TraesCS3B02G332600.1.cds1, TraesCS3D02G298100.1.cds1
Poaceae	Zoysia japonica	1	nbis-gene-49981
Poaceae	Zoysia macrostachya	3	Zma_g26866, Zma_g28575, Zma_g3584
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g32080
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_12_RagTag.567
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-16033, nbisL1-mrna-21820
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-2816
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-549, nbisL1-mrna-6250, nbisL1-mrna-7307
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.285, evm.TU.utg000011l.392
Rhizophoraceae	Kandelia obovata	2	Maker00007939, Maker00012684
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-19500, nbisL1-mrna-23393
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-12764, nbisL1-mrna-3393
Salicaceae	Populus euphratica	1	populus_peu00559
Solanaceae	Lycium barbarum	2	gene-LOC132615651, gene-LOC132626872
Solanaceae	Solanum chilense	1	SOLCI006205000
Solanaceae	Solanum pennellii	2	gene-LOC107016225, gene-LOC107018215
Tamaricaceae	Reaumuria soongarica	3	gene_15760, gene_2036, gene_9393
Zosteraceae	Zostera marina	1	Zosma05g10940.v3.1