Basic Information
Locus ID:
Ag5G02447
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 295619122 | 295626671 | - | Ag5G02447 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 89,584.24 Da | 49.59 | 81.10 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14010 | STKc_ULK4 | 4 | 257 | 2.34295E-155 | - |
| Pfam | PF00069 | Protein kinase domain | 4 | 256 | 1.3E-64 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 258 | 1.17E-82 | IPR011009 |
| SUPERFAMILY | SSF48371 | ARM repeat | 555 | 784 | 5.32E-16 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 547 | 794 | 1.8E-14 | IPR011989 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 305 | 6.4E-81 | - |
| SMART | SM00220 | serkin_6 | 4 | 257 | 3.3E-85 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 4 | 257 | 48.597652 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 117 | 129 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 10 | 33 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 347 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18700.1 | Protein kinase family protein with ARM repeat domain. Encodes a microtubule-associated kinase-like protein RUNKEL (RUK). Contains a putative serine/threonine kinase domain and a microtubule-binding domain. RUK directly binds to microtubules in vitro and colocalizes with mitotic preprophase band, spindle, and phragmoplast in vivo. Required for cell plate expansion in cytokinesis. | 0 |
| RefSeq | XP_017215414.1 | PREDICTED: serine/threonine-protein kinase RUNKEL [Daucus carota subsp. sativus] | 0 |
| F4JY37 | Serine/threonine-protein kinase RUNKEL OS=Arabidopsis thaliana OX=3702 GN=RUK PE=1 SV=1 | 0 | |
| TrEMBL | A0A161X4Y6 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024617 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.206344 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.643052 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.525819 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.469454 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.625019 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.088131 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.197282 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 28.147314 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 26.499895 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 30.082596 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.416389 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.442991 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.361822 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.368685 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.721138 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.431682 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.484695 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.821919 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.816031 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.890542 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.116647 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.416384 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.022055 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.494038 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.061791 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.753824 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.119201 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.090415 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.025939 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.062041 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.112498 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.002327 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.101733 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.039541 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.45241 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.364895 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.156068 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.437792 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.590802 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.828755 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.641041 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.371765 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.612635 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.639634 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.950146 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.64162 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5696 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4224 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020593 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g191600 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg24770, Sbi_jg41685, Sbi_jg48458, Sbi_jg8634 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19970, Seu_jg27764 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00022287, GOSA_00027236 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl00072, Sgl05142, Sgl05143, Sgl05155, Sgl05160, Sgl42635 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000012735, gene:ENSEOMG00000032130 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0015770, CQ.Regalona.r1.3BG0016730 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30238410, pistato.v30245450 |
| Apiaceae | Apium graveolens | 1 | Ag5G02447 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G002920 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711717 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1517.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G20824 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G18700.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012450m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g25640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g044010.2N, BniB08g009460.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0959, Ceq09G1225 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G1033, Cgl03G1039, Cgl09G1314 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g04950 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0075s00021.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g03590 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-5064, nbisL1-mrna-5065 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1368 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026208 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08817, Lb2G08818, Lb2G08820 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.966, BH02.1157, CH02.1274 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0005050, gene-QOZ80_1BG0053560 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0193160.1, HORVU.MOREX.r3.3HG0254050.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_052177 |
| Poaceae | Oryza coarctata | 2 | Oco01G006990, Oco02G007320 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g15480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G106800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604022, Pt_Chr0605285 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G026290, Chr03G001880, Chr05G004030, Chr08G003230 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G739900, Tel3E01G308600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG062730, gene_TRIDC2BG066680 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G436400.1, TraesCS2B02G456800.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb127880_P001, Zm00001eb333450_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32444, nbis-gene-7302 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7399, Zma_g9729 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2016, evm.TU.LG14.316 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g34030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.648 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16040 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16706 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-539, nbisL1-mrna-540 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.385 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007779 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13690 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3591 |
| Salicaceae | Populus euphratica | 3 | populus_peu07801, populus_peu09144, populus_peu37742 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609350 |
| Solanaceae | Solanum chilense | 1 | SOLCI001690200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028809 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8495 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1556 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20210.v3.1 |