Basic Information
Locus ID:
Ag5G02435
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 294929799 | 294937266 | + | Ag5G02435 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 44,172.61 Da | 41.30 | 96.31 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 48 | 298 | 1.2E-8 | IPR011990 |
| Coils | Coil | Coil | 73 | 93 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21465.1 | 0 | |
| RefSeq | XP_017219359.1 | PREDICTED: uncharacterized protein LOC108196548 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164TEA4 | ANK_REP_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024549 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 29.600023 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 18.18404 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.986801 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.994348 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.189827 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.69892 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.275008 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.319543 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 32.267334 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 27.762894 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 32.484531 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 37.619808 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 34.210228 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 27.552948 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.198633 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.157312 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.855748 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.010458 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.069938 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.628684 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.323409 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.830021 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.368947 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.470703 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.974308 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.504958 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 16.362955 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.716845 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.091812 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.274314 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.828371 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.151496 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 18.093262 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 29.336046 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.360603 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 15.569378 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.807532 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 11.513407 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.138236 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.622035 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.772946 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.087565 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.92744 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.967228 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.07864 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.908108 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.517728 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 33.995777 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 32.913872 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 32.17033 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5687 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18747 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030095 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59766, Sbi_jg62798 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24045 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018592 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl43480, Sgl48279 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009608, gene:ENSEOMG00000030779 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0015850, CQ.Regalona.r1.3BG0015930 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30136530, pistato.v30238620 |
| Apiaceae | Apium graveolens | 1 | Ag5G02435 |
| Arecaceae | Cocos nucifera | 1 | scaffold001159G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103699901 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.1647.V1.1, AsparagusV1_07.1473.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G26226, Ftri5G23444 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G21465.1, AT4G15640.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10021000m.g.v1.0, Thhalv10025397m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g19500.v2.2, Sp7g13890.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g041760.2N, BniB07g021080.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1205 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1296 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g04800 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g27560 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1354 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035149 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03055 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3998, BH03.4327, CH07.186 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0580780, gene-QOZ80_7BG0611940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0114570.1 |
| Poaceae | Oryza coarctata | 2 | Oco13G015230, Oco14G016070 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g47201.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G383000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305160 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G021170, Chr19G000640, Chr24G012960, Chr27G016870 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G250200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG014320, gene_TRIDC2BG017280 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G118700.1, TraesCS2B02G138600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb330100_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-152, nbis-gene-33200 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5743, Zma_g7033 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2063, evm.TU.LG14.362 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g10260 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.547 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1418 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21367 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-6265, nbisL1-mrna-6266 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.882 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012424 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6277 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2031 |
| Salicaceae | Populus euphratica | 2 | populus_peu07892, populus_peu07900 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616877 |
| Solanaceae | Solanum chilense | 1 | SOLCI004043800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024091 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9414 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1595 |
| Zosteraceae | Zostera marina | 1 | Zosma06g24960.v3.1 |