Basic Information
Locus ID:
Ag5G02434
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Lipase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 294923992 | 294928370 | + | Ag5G02434 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 39,926.25 Da | 29.73 | 87.56 | 0.01 |
Protein Domain:
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18630.2 | alpha/beta-Hydrolases superfamily protein. | 0 |
| RefSeq | XP_017218941.1 | PREDICTED: lipase [Daucus carota subsp. sativus] | 0 |
| P19515 | Lipase OS=Rhizomucor miehei OX=4839 PE=1 SV=2 | 0 | |
| TrEMBL | A0A164TEB6 | Lipase_3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024550 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 25.751511 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.482731 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 26.558392 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 25.396097 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 27.280764 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 38.540707 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 34.04163 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 38.600891 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.974027 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 16.136539 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.99058 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 15.308471 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.778132 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.553891 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.222953 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.213195 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.71781 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.394252 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.825291 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.146727 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.000788 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.634775 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.784391 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.420707 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.356912 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.93459 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.241551 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.956276 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.818819 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.016286 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.670291 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 17.796133 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 22.418036 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.342367 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.511488 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.186619 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.801113 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.721469 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.904255 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 15.494267 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.521006 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 22.316555 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 40.859634 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 40.838509 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 56.993877 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 22.313837 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 55.140911 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.341353 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 20.639248 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.323561 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11222, jg28002 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4303 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020769 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg51689, Sbi_jg5359 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13220 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001870 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00781, Sgl05793 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015741, gene:ENSEOMG00000029225 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0016180, CQ.Regalona.r1.3BG0016090 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235080 |
| Apiaceae | Apium graveolens | 2 | Ag5G02434, Ag9G01844 |
| Arecaceae | Cocos nucifera | 3 | COCNU_04G009230, COCNU_16G003000, scaffold012222G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696397, gene-LOC103711735, gene-LOC103717820 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.99.V1.1, AsparagusV1_07.1520.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G30887, Ftri3G09642 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G18630.1, AT5G18640.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013941m.g.v1.0, Thhalv10013982m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g25695.v2.2, Sp6g25700.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g044120.2N, BniB05g045060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1202 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1292 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g01150, gene.Cymno04g05480 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0010s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g27500, gene.Thate05g08380 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-5066, nbisL1-mrna-5450 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1350 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022522 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11600 |
| Poaceae | Echinochloa crus-galli | 16 | AH01.3643, AH02.4448, AH03.4003, AH04.2104, AH05.2702 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_1AG0045910, gene-QOZ80_1BG0095880 ... |
| Poaceae | Hordeum vulgare | 5 | HORVU.MOREX.r3.1HG0059850.1, HORVU.MOREX.r3.2HG0114390.1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_018306, gene-QYE76_038934, gene-QYE76_057760 ... |
| Poaceae | Oryza coarctata | 8 | Oco01G029480, Oco02G030660, Oco05G013450, Oco06G012960 ... |
| Poaceae | Oryza sativa | 5 | LOC_Os01g71010.1, LOC_Os03g22670.1, LOC_Os05g30900.1 ... |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_01G355400, gene-BS78_02G383500 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0102717, Pt_Chr0305162, Pt_Chr0505278, Pt_Chr0505312 ... |
| Poaceae | Sporobolus alterniflorus | 13 | Chr02G001460, Chr05G032990, Chr05G033100, Chr07G014520 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel1E01G391100, Tel2E01G248600, Tel2E01G279200 ... |
| Poaceae | Triticum dicoccoides | 10 | gene_TRIDC1AG035610, gene_TRIDC1BG040690 ... |
| Poaceae | Triticum aestivum | 14 | TraesCS1A02G236500.1, TraesCS1B02G247200.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb016740_P002, Zm00001eb141920_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-1591, nbis-gene-37616, nbis-gene-48460 |
| Poaceae | Zoysia macrostachya | 6 | Zma_g11897, Zma_g1214, Zma_g18247, Zma_g19112, Zma_g26729 ... |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.2068, evm.TU.LG13.903, evm.TU.LG14.366 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g10220, gene.Posoc02g32700 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_5_RagTag.255, evm.TU.Scaffold_5_RagTag.256 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10833 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11110 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10538 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.164 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013477 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9187 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7043 |
| Salicaceae | Populus euphratica | 1 | populus_peu22180 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132626828, gene-LOC132641956 |
| Solanaceae | Solanum chilense | 2 | SOLCI002861100, SOLCI005054800 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107008350, gene-LOC107022830, gene-LOC107024168 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9412 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1589 |
| Zosteraceae | Zostera marina | 1 | Zosma03g20440.v3.1 |