Basic Information
Locus ID:
Ag5G02409
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
gamete expressed 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 292730147 | 292745434 | - | Ag5G02409 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 141,159.91 Da | 30.96 | 95.47 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00630 | Filamin/ABP280 repeat | 366 | 467 | 3.0E-9 | IPR017868 |
| Pfam | PF00630 | Filamin/ABP280 repeat | 480 | 576 | 1.8E-9 | IPR017868 |
| SUPERFAMILY | SSF56219 | DNase I-like | 1143 | 1259 | 1.97E-5 | IPR036691 |
| SUPERFAMILY | SSF81296 | E set domains | 502 | 583 | 3.07E-11 | IPR014756 |
| SUPERFAMILY | SSF81296 | E set domains | 147 | 255 | 2.27E-6 | IPR014756 |
| Gene3D | G3DSA:2.60.40.3440 | - | 580 | 626 | 2.9E-7 | - |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 1141 | 1271 | 1.0E-15 | IPR036691 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 367 | 477 | 6.2E-6 | IPR013783 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 478 | 579 | 4.5E-13 | IPR013783 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 147 | 258 | 3.3E-6 | IPR013783 |
| ProSiteProfiles | PS50194 | Filamin/ABP280 repeat profile. | 219 | 253 | 9.136394 | IPR017868 |
| ProSiteProfiles | PS50194 | Filamin/ABP280 repeat profile. | 474 | 580 | 15.157104 | IPR017868 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49150.3 | - | 0 |
| RefSeq | XP_017219390.1 | PREDICTED: protein GAMETE EXPRESSED 2 [Daucus carota subsp. sativus] | 0 |
| F4K4R6 | Protein GAMETE EXPRESSED 2 OS=Arabidopsis thaliana OX=3702 GN=GEX2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164SIY9 | Protein GAMETE EXPRESSED 2 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023295 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.036292 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.009848 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.050179 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.059093 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.092608 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.401684 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.183452 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.170887 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.018918 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.091633 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.103332 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.098589 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.198698 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.143887 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.121218 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.139991 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.011297 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.050446 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.073487 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.361466 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.163372 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.008887 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.013623 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.913281 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.410416 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.574913 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28056, jg28058 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19054 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012422 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59613, Sbi_jg63036 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23858 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025794 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl03321, Sgl03623, Sgl08394, Sgl08743 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000015254, gene:ENSEOMG00000029727 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0016650, CQ.Regalona.r1.3BG0017410 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30234120 |
| Apiaceae | Apium graveolens | 1 | Ag5G02409 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G012410 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710484 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2580.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G16829 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G49150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005444m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g19500.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g070140.2N, BniB04g005630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1115 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1211 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g07490 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g24850 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12155 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1280 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022641 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G38029, Lb0G38030, Lb0G38031 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1978, BH03.2425, CH03.2309 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6AG0535730 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0482440.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_011719, gene-QYE76_017069 |
| Poaceae | Oryza coarctata | 2 | Oco17G005300, Oco18G005320 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g25650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G187800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0705316 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G009610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G362000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5AG035460, gene_TRIDC5AG035470 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G221000.2, TraesCS5B02G219800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb099800_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20085 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32383 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.632, evm.TU.LG12.460, evm.TU.LG12.999 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g19310, gene.Posoc01g32080, gene.Posoc07g05890 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1454 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-20033, nbisL1-mrna-20034, nbisL1-mrna-20259 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13567 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-13395, nbisL1-mrna-13396, nbisL1-mrna-19089 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.214 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00011901, Maker00012099 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9086 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12134 |
| Salicaceae | Populus euphratica | 1 | populus_peu22635 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626771 |
| Solanaceae | Solanum chilense | 1 | SOLCI000635200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015974 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8526 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1661 |
| Zosteraceae | Zostera marina | 1 | Zosma01g40020.v3.1 |